Variant report

Variant	rs10153263
Chromosome Location	chr17:20955612-20955613
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:20944181..20948494-chr17:20954104..20959819,7	K562	blood:
2	chr17:20944770..20948425-chr17:20952239..20957809,9	MCF-7	breast:
3	chr17:20952641..20955684-chr17:20955764..20958455,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124422	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10512422	0.96[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11541314	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650653	0.82[ASN][1000 genomes]
rs11869201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869217	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869959	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450389	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12452171	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12937950	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12947514	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962364	0.96[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1871275	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2127096	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886049	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34354508	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35022634	0.82[ASN][1000 genomes]
rs4381653	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427861	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985942	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4985945	0.82[ASN][1000 genomes]
rs55633111	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57522885	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6587107	0.82[ASN][1000 genomes]
rs6587113	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6587116	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66487709	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66516868	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs719094	0.96[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73303698	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8072149	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080321	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs984007	0.95[CEU][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9893047	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895618	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9896853	0.82[ASN][1000 genomes]
rs9907786	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909279	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914758	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914916	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949097	chr17:20801739-21406355	Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv529759	chr17:20839079-21529632	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv827917	chr17:20896100-20961777	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20954400-20956000	Enhancers	Primary B cells from cord blood	blood
2	chr17:20954400-20958400	Enhancers	Primary B cells from peripheral blood	blood
3	chr17:20954600-20955800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr17:20954800-20956200	Enhancers	Fetal Stomach	stomach
5	chr17:20955000-20955800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr17:20955200-20955800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:20955200-20955800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:20955200-20955800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:20955200-20955800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:20955200-20955800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr17:20955200-20955800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr17:20955200-20955800	Enhancers	Adipose Nuclei	Adipose
13	chr17:20955200-20955800	Enhancers	Fetal Muscle Leg	muscle
14	chr17:20955200-20955800	Enhancers	Lung	lung
15	chr17:20955200-20955800	Enhancers	Spleen	Spleen
16	chr17:20955200-20955800	Enhancers	Hela-S3	cervix
17	chr17:20955200-20956000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr17:20955200-20956000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr17:20955200-20956200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr17:20955200-20956200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:20955200-20956400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr17:20955200-20956400	Flanking Active TSS	GM12878-XiMat	blood
23	chr17:20955200-20956600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr17:20955200-20956600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr17:20955200-20956600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr17:20955400-20955800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr17:20955400-20955800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr17:20955400-20955800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr17:20955400-20955800	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr17:20955400-20955800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr17:20955400-20955800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr17:20955400-20956000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr17:20955400-20956000	Enhancers	Fetal Kidney	kidney
34	chr17:20955400-20956000	Enhancers	Placenta	Placenta
35	chr17:20955400-20956200	Enhancers	H9 Cell Line	embryonic stem cell
36	chr17:20955400-20956200	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr17:20955400-20956400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr17:20955600-20955800	Enhancers	Colonic Mucosa	Colon
39	chr17:20955600-20955800	Enhancers	Duodenum Mucosa	Duodenum
40	chr17:20955600-20955800	Enhancers	Fetal Lung	lung
41	chr17:20955600-20956000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr17:20955600-20956000	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr17:20955600-20956000	Enhancers	A549	lung
44	chr17:20955600-20956000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr17:20955600-20956200	Enhancers	HepG2	liver

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