Variant report

Variant	rs10155208
Chromosome Location	chr4:6998472-6998473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:6997053..6999861-chr4:7067007..7069346,2	K562	blood:

Variant related genes	Relation type
ENSG00000109519	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10009332	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10013211	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10013696	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10015163	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10019256	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10022869	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10937771	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12512922	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12648134	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12650200	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12650264	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13140943	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17742611	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17743234	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2301820	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2301821	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28380685	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34173965	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35490604	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35772786	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3857168	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3857169	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3857170	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3857172	0.86[ASN][1000 genomes]
rs3857173	0.84[ASN][1000 genomes]
rs3892145	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3892976	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4234790	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4315786	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4484301	0.91[EUR][1000 genomes]
rs4689571	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4689572	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56307635	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6834007	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7672632	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9999127	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6990400-7008800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:6991000-7021800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:6991400-7000800	Weak transcription	Colonic Mucosa	Colon
4	chr4:6991600-7000000	Weak transcription	Hela-S3	cervix
5	chr4:6993200-6999000	Strong transcription	Dnd41	blood
6	chr4:6993200-7006800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:6993800-6998800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:6993800-7008400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:6994000-7000200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:6994000-7005200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:6994000-7008600	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:6994000-7035600	Strong transcription	Fetal Stomach	stomach
13	chr4:6994000-7043200	Weak transcription	Right Atrium	heart
14	chr4:6994200-7000400	Weak transcription	Fetal Heart	heart
15	chr4:6994200-7000600	Strong transcription	Fetal Muscle Leg	muscle
16	chr4:6994200-7035400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:6994400-6999600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:6994400-7000800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:6994400-7000800	Weak transcription	Pancreas	Pancrea
20	chr4:6994400-7001000	Strong transcription	Fetal Muscle Trunk	muscle
21	chr4:6994400-7013400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:6994600-6999600	Strong transcription	Primary T cells from cord blood	blood
23	chr4:6994600-6999600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr4:6994600-7000200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr4:6994600-7006800	Strong transcription	Stomach Smooth Muscle	stomach
26	chr4:6994600-7021400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:6994800-6999800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr4:6994800-7000600	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr4:6994800-7007600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:6995000-6998600	Weak transcription	K562	blood
31	chr4:6995000-6999000	Strong transcription	Adipose Nuclei	Adipose
32	chr4:6995000-7009200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:6995000-7020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:6995200-6999800	Strong transcription	Placenta	Placenta
35	chr4:6995200-7000200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:6995200-7000600	Weak transcription	Brain Substantia Nigra	brain
37	chr4:6995200-7000600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr4:6995200-7000800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr4:6995200-7008400	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr4:6995200-7008600	Strong transcription	Fetal Intestine Small	intestine
41	chr4:6995400-6998600	Weak transcription	Stomach Mucosa	stomach
42	chr4:6995400-6999000	Strong transcription	Osteobl	bone
43	chr4:6995400-6999400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:6995400-6999800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:6995400-6999800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:6995400-7000800	Weak transcription	Brain Angular Gyrus	brain
47	chr4:6995400-7005000	Strong transcription	GM12878-XiMat	blood
48	chr4:6995400-7006600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr4:6995400-7007800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr4:6995400-7008600	Strong transcription	Fetal Intestine Large	intestine

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