Variant report

Variant	rs10156284
Chromosome Location	chr8:61811764-61811765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10957167	0.89[CEU][hapmap]
rs28415696	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35283678	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4370573	0.89[CEU][hapmap]
rs7009473	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7825402	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61799800-61812000	Weak transcription	Primary T cells from cord blood	blood
2	chr8:61807400-61812000	Weak transcription	Primary B cells from cord blood	blood
3	chr8:61807400-61812000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:61807600-61811800	Weak transcription	Fetal Thymus	thymus
5	chr8:61807600-61812000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr8:61807600-61812000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:61811400-61812000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:61811400-61812000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:61811400-61812200	Enhancers	Right Atrium	heart
10	chr8:61811400-61812200	Enhancers	GM12878-XiMat	blood
11	chr8:61811400-61814000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr8:61811400-61815600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr8:61811600-61812000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr8:61811600-61813200	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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