Variant report

Variant	rs10157225
Chromosome Location	chr1:216964401-216964402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10863270	0.91[CHB][hapmap];0.88[GIH][hapmap]
rs11572622	0.91[CHB][hapmap];0.88[GIH][hapmap]
rs12023645	0.89[YRI][hapmap]
rs12064264	0.81[ASN][1000 genomes]
rs17043767	0.90[CHB][hapmap];0.85[GIH][hapmap]
rs6658633	0.91[CHB][hapmap];0.88[GIH][hapmap]
rs6679016	0.91[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap]
rs6683574	0.91[CHB][hapmap];0.88[GIH][hapmap]
rs6687061	0.91[CHB][hapmap];0.88[GIH][hapmap]
rs6702277	0.91[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs946469	0.91[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762162	chr1:216942781-216966140	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216958800-216967400	Weak transcription	Right Atrium	heart
2	chr1:216959400-216964600	Weak transcription	Pancreas	Pancrea
3	chr1:216963600-216966200	Weak transcription	Gastric	stomach
4	chr1:216963800-216966600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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