Variant report

Variant	rs10157422
Chromosome Location	chr1:67518534-67518535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11810986	0.86[TSI][hapmap]
rs12092387	0.90[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12095648	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17129533	0.86[TSI][hapmap]
rs2985796	0.86[TSI][hapmap]
rs56765383	0.95[EUR][1000 genomes]
rs56974914	0.82[AMR][1000 genomes]
rs68022820	0.95[EUR][1000 genomes]
rs7512229	0.82[AMR][1000 genomes]
rs7553230	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10157422	SLC35D1	cis	Whole Blood	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67516800-67518600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:67516800-67520400	Active TSS	Fetal Intestine Large	intestine
3	chr1:67517000-67518600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:67517400-67520800	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr1:67517600-67518800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:67517600-67518800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:67517600-67519800	Active TSS	HMEC	breast
8	chr1:67517600-67520000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:67517600-67520200	Active TSS	K562	blood
10	chr1:67517600-67520400	Active TSS	Fetal Stomach	stomach
11	chr1:67517800-67518800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr1:67517800-67518800	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr1:67517800-67518800	Flanking Active TSS	Dnd41	blood
14	chr1:67517800-67519000	Flanking Active TSS	Liver	Liver
15	chr1:67517800-67519000	Flanking Active TSS	Fetal Brain Female	brain
16	chr1:67517800-67519800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:67517800-67520000	Active TSS	Stomach Smooth Muscle	stomach
18	chr1:67517800-67520400	Active TSS	NHLF	lung
19	chr1:67517800-67520600	Active TSS	Right Atrium	heart
20	chr1:67517800-67520800	Active TSS	NH-A	brain
21	chr1:67518000-67518600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr1:67518000-67518600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr1:67518000-67518600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:67518000-67518600	Active TSS	HepG2	liver
25	chr1:67518000-67518600	Flanking Active TSS	NHEK	skin
26	chr1:67518000-67518800	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr1:67518000-67518800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:67518000-67518800	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr1:67518000-67518800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:67518000-67518800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr1:67518000-67518800	Flanking Active TSS	HUVEC	blood vessel
32	chr1:67518000-67518800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr1:67518000-67519000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:67518000-67519200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:67518000-67519800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:67518000-67520200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr1:67518000-67520200	Active TSS	Placenta	Placenta
38	chr1:67518000-67520400	Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr1:67518000-67520400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:67518000-67520400	Active TSS	Aorta	Aorta
41	chr1:67518000-67520400	Active TSS	Ovary	ovary
42	chr1:67518000-67520400	Active TSS	Right Ventricle	heart
43	chr1:67518000-67520400	Active TSS	HSMM	muscle
44	chr1:67518000-67520600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:67518000-67520600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:67518000-67520600	Active TSS	Colonic Mucosa	Colon
47	chr1:67518000-67520600	Active TSS	Fetal Intestine Small	intestine
48	chr1:67518000-67520600	Active TSS	A549	lung
49	chr1:67518000-67520600	Active TSS	HSMMtube	muscle
50	chr1:67518200-67518600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell

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