Variant report

Variant	rs10157899
Chromosome Location	chr1:84314075-84314076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58017153	1.00[AFR][1000 genomes]
rs61188332	0.95[AFR][1000 genomes]
rs72936210	1.00[AFR][1000 genomes]
rs72954432	1.00[AFR][1000 genomes]
rs72954441	1.00[AFR][1000 genomes]
rs72954450	1.00[AFR][1000 genomes]
rs72954453	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523508	chr1:84310193-84314754	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84310800-84324400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:84311000-84314200	Enhancers	Fetal Intestine Large	intestine
4	chr1:84311200-84315200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:84311200-84315600	Weak transcription	Small Intestine	intestine
6	chr1:84311200-84321200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:84311400-84323800	Weak transcription	Primary T cells from cord blood	blood
8	chr1:84311800-84316400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:84312200-84316000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:84312200-84316400	Weak transcription	Liver	Liver
11	chr1:84312400-84322600	Weak transcription	Fetal Brain Female	brain
12	chr1:84312600-84315400	Weak transcription	Fetal Brain Male	brain
13	chr1:84313400-84314400	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links