Variant report

Variant	rs10158005
Chromosome Location	chr1:86052097-86052098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85931646..85934591-chr1:86050681..86053602,2	MCF-7	breast:
2	chr1:86051548..86054747-chr1:86058941..86061467,3	K562	blood:
3	chr1:86049608..86052158-chr1:86093207..86095698,2	MCF-7	breast:
4	chr1:86050411..86052188-chr1:86071339..86074227,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273264	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10157660	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10157673	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10157681	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10158350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56809993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61370276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7512436	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7519002	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9324149	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9324150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9658583	1.00[AMR][1000 genomes]
rs9658594	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv3391173	chr1:86005637-86337469	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86048600-86053400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:86048800-86053600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:86048800-86081200	Weak transcription	Gastric	stomach
4	chr1:86049000-86052200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:86049000-86052200	Weak transcription	Pancreas	Pancrea
6	chr1:86049000-86053600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:86049000-86053600	Weak transcription	Fetal Intestine Small	intestine
8	chr1:86049000-86068400	Weak transcription	Psoas Muscle	Psoas
9	chr1:86049200-86053200	Weak transcription	Left Ventricle	heart
10	chr1:86049200-86053600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:86049400-86053200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:86049400-86053600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:86049400-86053600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:86050200-86053400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:86050200-86053600	Weak transcription	Adipose Nuclei	Adipose
16	chr1:86050200-86053600	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:86050600-86053400	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:86050600-86053600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:86050600-86054800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:86050800-86053600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:86050800-86053600	Weak transcription	Fetal Stomach	stomach
22	chr1:86051000-86052200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:86051000-86052200	Enhancers	NHDF-Ad	bronchial
24	chr1:86051000-86053200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:86051000-86053200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:86051000-86053400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:86051000-86053600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr1:86051000-86053600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr1:86051000-86053600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:86051000-86053600	Weak transcription	Fetal Lung	lung
31	chr1:86051000-86062800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:86051200-86052200	Weak transcription	Fetal Brain Male	brain
33	chr1:86051200-86054400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:86051600-86052400	Enhancers	HSMM	muscle
35	chr1:86051600-86052800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:86051800-86052200	Enhancers	Fetal Brain Female	brain
37	chr1:86051800-86053400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:86051800-86053400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr1:86051800-86053400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr1:86051800-86053400	Weak transcription	A549	lung
41	chr1:86051800-86053600	Weak transcription	NH-A	brain
42	chr1:86052000-86052200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr1:86052000-86052200	Enhancers	Osteobl	bone
44	chr1:86052000-86053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr1:86052000-86053200	Weak transcription	Fetal Heart	heart
46	chr1:86052000-86053400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:86052000-86053400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr1:86052000-86053600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:86052000-86053600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr1:86052000-86053600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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