Variant report

Variant	rs10158395
Chromosome Location	chr1:186278240-186278241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186275203..186277075-chr1:186278106..186280795,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10494585	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs10494588	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs13375943	1.00[YRI][hapmap]
rs16825179	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16825187	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16825277	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16825282	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16825292	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs16825329	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2141392	0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2178213	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57020506	0.82[AFR][1000 genomes]
rs60957652	0.84[AFR][1000 genomes]
rs6425029	0.84[AFR][1000 genomes]
rs6674322	0.89[AMR][1000 genomes]
rs6679283	0.82[AFR][1000 genomes]
rs6685708	0.89[AMR][1000 genomes]
rs6695920	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6698164	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6698594	0.89[AMR][1000 genomes]
rs7530502	0.85[YRI][hapmap]
rs7547924	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3343276	chr1:186275179-186278377	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186265600-186279400	Weak transcription	A549	lung
2	chr1:186267200-186281600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:186267400-186280400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:186268400-186279200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr1:186268600-186281200	Weak transcription	Fetal Intestine Large	intestine
6	chr1:186269000-186281400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:186269400-186281400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:186269400-186281400	Weak transcription	Fetal Heart	heart
9	chr1:186270400-186279200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:186270400-186279600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:186272000-186280000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:186272000-186280000	Weak transcription	Osteobl	bone
13	chr1:186272000-186306000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr1:186272400-186278800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:186272400-186279600	Strong transcription	Liver	Liver
16	chr1:186272400-186280400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:186272400-186281200	Weak transcription	NHDF-Ad	bronchial
18	chr1:186273200-186283800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr1:186273200-186284000	Weak transcription	Spleen	Spleen
20	chr1:186273200-186286200	Weak transcription	Pancreas	Pancrea
21	chr1:186273200-186290000	Weak transcription	Gastric	stomach
22	chr1:186275000-186279600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:186275000-186279600	Weak transcription	Left Ventricle	heart
24	chr1:186275000-186280200	Weak transcription	Placenta	Placenta
25	chr1:186275000-186281200	Weak transcription	Adipose Nuclei	Adipose
26	chr1:186275000-186281400	Weak transcription	NHEK	skin
27	chr1:186275000-186282800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:186275000-186284000	Weak transcription	Aorta	Aorta
29	chr1:186275000-186284000	Weak transcription	Esophagus	oesophagus
30	chr1:186275000-186284000	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:186275000-186284000	Weak transcription	Lung	lung
32	chr1:186275000-186284000	Weak transcription	Right Ventricle	heart
33	chr1:186275000-186284800	Weak transcription	Brain Substantia Nigra	brain
34	chr1:186275000-186286200	Weak transcription	Psoas Muscle	Psoas
35	chr1:186275200-186281200	Weak transcription	HUVEC	blood vessel
36	chr1:186275200-186281400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:186275200-186284000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:186275600-186283600	Weak transcription	HSMMtube	muscle
39	chr1:186276400-186280600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr1:186276400-186281800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr1:186276600-186280400	Weak transcription	Brain Anterior Caudate	brain
42	chr1:186276600-186280800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr1:186276600-186281400	Weak transcription	Colon Smooth Muscle	Colon
44	chr1:186276600-186281600	Weak transcription	Brain Angular Gyrus	brain
45	chr1:186276800-186278400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr1:186276800-186280000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:186276800-186284800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:186276800-186285800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr1:186277000-186281200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr1:186277000-186283600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links