Variant report

Variant	rs1015870
Chromosome Location	chr13:67798250-67798251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67263755..67264355-chr13:67798086..67798947,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1590522	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2031864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7318837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7332095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7334490	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8000565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9317652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.82[MKK][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9317653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9317654	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9317657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9529205	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9541030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9564380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67794600-67800000	Active TSS	Fetal Brain Female	brain
2	chr13:67795400-67805600	Active TSS	Brain Substantia Nigra	brain
3	chr13:67795800-67799600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:67795800-67799800	Active TSS	Right Atrium	heart
5	chr13:67796000-67798600	Weak transcription	Colon Smooth Muscle	Colon
6	chr13:67796000-67799600	Active TSS	Brain Hippocampus Middle	brain
7	chr13:67796000-67799600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:67796000-67799600	Active TSS	Stomach Smooth Muscle	stomach
9	chr13:67796200-67799400	Active TSS	Brain Anterior Caudate	brain
10	chr13:67796200-67799400	Active TSS	Brain Germinal Matrix	brain
11	chr13:67796200-67799600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:67796200-67799600	Weak transcription	Fetal Thymus	thymus
13	chr13:67796200-67799600	Active TSS	A549	lung
14	chr13:67796200-67801800	Weak transcription	Psoas Muscle	Psoas
15	chr13:67796200-67803000	Weak transcription	Gastric	stomach
16	chr13:67796200-67806000	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr13:67796200-67806200	Active TSS	Brain Angular Gyrus	brain
18	chr13:67796400-67799400	Active TSS	Brain Cingulate Gyrus	brain
19	chr13:67796600-67798400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr13:67797200-67799600	Active TSS	Fetal Brain Male	brain
21	chr13:67797200-67806000	Active TSS	Right Ventricle	heart
22	chr13:67797400-67799000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:67797400-67799600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr13:67797600-67806200	Active TSS	Fetal Kidney	kidney
25	chr13:67797800-67798600	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr13:67798000-67798600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:67798000-67798600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr13:67798000-67798600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr13:67798000-67798800	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr13:67798000-67799400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr13:67798200-67798400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr13:67798200-67798400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr13:67798200-67798400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:67798200-67798400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr13:67798200-67798400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr13:67798200-67798400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr13:67798200-67798400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr13:67798200-67798400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr13:67798200-67798400	Flanking Active TSS	Fetal Heart	heart
40	chr13:67798200-67798400	Active TSS	Fetal Muscle Trunk	muscle
41	chr13:67798200-67798400	Flanking Active TSS	Fetal Stomach	stomach
42	chr13:67798200-67798400	Enhancers	Ovary	ovary
43	chr13:67798200-67798400	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr13:67798200-67798400	Flanking Active TSS	NHDF-Ad	bronchial
45	chr13:67798200-67798600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr13:67798200-67798600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:67798200-67798600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr13:67798200-67798600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr13:67798200-67798600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr13:67798200-67798600	Flanking Active TSS	Primary B cells from peripheral blood	blood

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