Variant report

Variant	rs10159193
Chromosome Location	chr1:72696255-72696256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1084442	1.00[AMR][1000 genomes]
rs12239998	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13373981	1.00[AMR][1000 genomes]
rs13375319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376275	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376591	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1599333	1.00[AMR][1000 genomes]
rs1664370	1.00[AMR][1000 genomes]
rs17092521	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17092541	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17092660	1.00[AMR][1000 genomes]
rs17131762	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2199337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2590946	1.00[AMR][1000 genomes]
rs2613472	1.00[AMR][1000 genomes]
rs2613474	1.00[AMR][1000 genomes]
rs2815769	1.00[AMR][1000 genomes]
rs2815770	1.00[AMR][1000 genomes]
rs28544516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs290694	1.00[AMR][1000 genomes]
rs290699	1.00[AMR][1000 genomes]
rs290700	1.00[AMR][1000 genomes]
rs482335	1.00[AMR][1000 genomes]
rs511331	1.00[AMR][1000 genomes]
rs782220	1.00[AMR][1000 genomes]
rs782241	1.00[AMR][1000 genomes]
rs782247	1.00[AMR][1000 genomes]
rs782248	1.00[AMR][1000 genomes]
rs782249	1.00[AMR][1000 genomes]
rs782250	1.00[AMR][1000 genomes]
rs782251	1.00[AMR][1000 genomes]
rs782253	1.00[AMR][1000 genomes]
rs782254	1.00[AMR][1000 genomes]
rs782255	1.00[AMR][1000 genomes]
rs782256	1.00[AMR][1000 genomes]
rs782258	1.00[AMR][1000 genomes]
rs796699	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916783	chr1:72196061-72707953	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1007073	chr1:72419858-72734657	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1006076	chr1:72477436-72700903	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv534996	chr1:72477436-72700903	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv428454	chr1:72504469-72926256	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv461939	chr1:72555489-72717743	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv546482	chr1:72555489-72717743	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1013250	chr1:72603540-72762582	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv830192	chr1:72616562-72806118	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv461951	chr1:72634912-72707226	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
11	nsv546485	chr1:72634912-72707226	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
12	nsv1014832	chr1:72642420-72823477	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv534997	chr1:72642420-72823477	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv546486	chr1:72654730-72729142	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72692200-72698800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:72694200-72698200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:72695400-72697200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:72695600-72697000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:72695600-72697000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:72695600-72697000	Enhancers	Rectal Smooth Muscle	rectum
7	chr1:72695600-72697000	Enhancers	Hela-S3	cervix
8	chr1:72695600-72697000	Enhancers	HMEC	breast
9	chr1:72695600-72697000	Enhancers	HUVEC	blood vessel
10	chr1:72695600-72697000	Enhancers	Osteobl	bone
11	chr1:72695600-72697200	Enhancers	NHDF-Ad	bronchial
12	chr1:72695800-72697200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:72695800-72698200	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:72695800-72698200	Weak transcription	HepG2	liver
15	chr1:72696000-72696400	Weak transcription	NHLF	lung
16	chr1:72696000-72697000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:72696000-72697200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:72696200-72696800	Enhancers	NHEK	skin
19	chr1:72696200-72697200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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