Variant report

Variant	rs10159525
Chromosome Location	chr10:6490456-6490457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11258964	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11258984	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6456200-6496600	Weak transcription	Pancreas	Pancrea
2	chr10:6464600-6490600	Strong transcription	Primary T cells from cord blood	blood
3	chr10:6465800-6496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:6465800-6496600	Weak transcription	Psoas Muscle	Psoas
5	chr10:6465800-6501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:6467400-6496200	Weak transcription	Lung	lung
7	chr10:6468200-6496800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:6477400-6503600	Weak transcription	Gastric	stomach
9	chr10:6478800-6491000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:6480200-6501000	Weak transcription	Ovary	ovary
11	chr10:6480800-6497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:6481200-6500200	Weak transcription	Fetal Intestine Small	intestine
13	chr10:6481400-6497800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:6484000-6496200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:6484200-6496200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:6484200-6496400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:6484600-6496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:6487200-6490600	Genic enhancers	Fetal Thymus	thymus
19	chr10:6488200-6496200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:6488200-6496200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:6488200-6496200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:6488200-6496200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:6488200-6496200	Weak transcription	Brain Substantia Nigra	brain
24	chr10:6488200-6496400	Weak transcription	Adipose Nuclei	Adipose
25	chr10:6488200-6496400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:6488200-6497600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:6488200-6499600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:6488200-6500200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:6488200-6502000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:6488400-6490600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr10:6488400-6490800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:6488400-6496600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:6488400-6496600	Weak transcription	Brain Anterior Caudate	brain
34	chr10:6488400-6500200	Weak transcription	Esophagus	oesophagus
35	chr10:6488400-6506800	Weak transcription	K562	blood
36	chr10:6488600-6490600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:6488600-6490800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:6488800-6490600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:6489200-6490600	Strong transcription	Fetal Stomach	stomach
40	chr10:6489400-6490600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:6490000-6490800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:6490000-6497800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:6490200-6496000	Weak transcription	Dnd41	blood
44	chr10:6490200-6496200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:6490200-6496200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:6490400-6490600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:6490400-6496000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:6490400-6496200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:6490400-6496200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr10:6490400-6496200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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