Variant report

Variant	rs10160924
Chromosome Location	chr12:22059371-22059372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10743427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1344570	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492135	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1517277	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1826365	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4762719	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4762720	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv470275	chr12:21938544-22126314	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv898900	chr12:22044843-22083212	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv898901	chr12:22047174-22075960	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv898902	chr12:22047174-22083212	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv557754	chr12:22051089-22072257	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:22035200-22092200	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:22045400-22064800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:22045600-22064800	Weak transcription	Fetal Heart	heart
4	chr12:22048000-22092000	Weak transcription	Psoas Muscle	Psoas
5	chr12:22048400-22060000	Weak transcription	Adipose Nuclei	Adipose
6	chr12:22048400-22091600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr12:22049400-22061600	Weak transcription	Fetal Kidney	kidney
8	chr12:22049400-22088600	Weak transcription	Colon Smooth Muscle	Colon
9	chr12:22052600-22060000	Weak transcription	Fetal Lung	lung
10	chr12:22058000-22061200	Weak transcription	Ovary	ovary
11	chr12:22058000-22065200	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr12:22058400-22061200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:22058400-22062000	Strong transcription	Stomach Smooth Muscle	stomach
14	chr12:22058600-22059600	Enhancers	NHDF-Ad	bronchial
15	chr12:22058600-22060200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:22058800-22059400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:22058800-22059400	Strong transcription	Liver	Liver
18	chr12:22058800-22060800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr12:22059000-22061200	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr12:22059200-22059600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:22059200-22060000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr12:22059200-22060200	Enhancers	Osteobl	bone
23	chr12:22059200-22060600	Enhancers	NHLF	lung
24	chr12:22059200-22061800	Strong transcription	Left Ventricle	heart
25	chr12:22059200-22062600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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