Variant report

Variant	rs10161234
Chromosome Location	chr12:117772840-117772841
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr12:117772703-117773016	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr12:117772663-117773032	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr12:117772433-117773469	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr12:117772699-117773001	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr12:117772694-117772989	U87	brain:	n/a	n/a
6	POLR2A	chr12:117772694-117773005	U87	brain:	n/a	n/a
7	STAT3	chr12:117772794-117772951	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr12:117772771-117772971	MCF10A-Er-Src	breast:	n/a	chr12:117772962-117772969
9	MYC	chr12:117772693-117773323	MCF10A-Er-Src	breast:	n/a	chr12:117773206-117773215
10	STAT3	chr12:117772673-117772891	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr12:117772730-117773071	MCF10A-Er-Src	breast:	n/a	chr12:117772962-117772969 chr12:117772965-117772973

Variant related genes	Relation type
NOS1	TF binding region

rs_ID	r²[population]
rs10160911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304788	1.00[AMR][1000 genomes]
rs7958407	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117765000-117773000	Weak transcription	Pancreas	Pancrea
2	chr12:117771200-117773200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:117771200-117773400	Bivalent Enhancer	Adipose Nuclei	Adipose
4	chr12:117771200-117773400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
5	chr12:117771200-117773400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr12:117771200-117773600	Enhancers	Lung	lung
7	chr12:117771200-117773800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:117771400-117773600	Bivalent Enhancer	Fetal Stomach	stomach
9	chr12:117771400-117773600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr12:117771600-117773000	Weak transcription	Spleen	Spleen
11	chr12:117771600-117776600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:117771600-117776600	Weak transcription	A549	lung
13	chr12:117771600-117789000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr12:117771800-117773400	Enhancers	Brain Anterior Caudate	brain
15	chr12:117771800-117776400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:117771800-117776600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr12:117772000-117773000	Enhancers	Fetal Brain Female	brain
18	chr12:117772000-117773400	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr12:117772000-117776000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr12:117772200-117776600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:117772400-117774400	Enhancers	Psoas Muscle	Psoas
22	chr12:117772600-117773000	Bivalent Enhancer	Brain Hippocampus Middle	brain
23	chr12:117772600-117773000	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr12:117772600-117773200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr12:117772600-117773200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr12:117772600-117773200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
27	chr12:117772800-117773000	Bivalent Enhancer	Brain Angular Gyrus	brain
28	chr12:117772800-117773000	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr12:117772800-117773400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr12:117772800-117773600	Enhancers	NHEK	skin

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