Variant report

Variant	rs10161421
Chromosome Location	chr12:105114231-105114232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105113967..105116060-chr12:105116294..105118567,3	K562	blood:
2	chr12:105114220..105116459-chr12:105123813..105125766,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs903248	0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105080400-105131800	Weak transcription	NHEK	skin
2	chr12:105098400-105115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105098400-105116200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:105104800-105116200	Weak transcription	A549	lung
5	chr12:105106600-105120600	Weak transcription	Pancreas	Pancrea
6	chr12:105107200-105115000	Weak transcription	K562	blood
7	chr12:105107600-105114600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:105108000-105114400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:105108800-105117600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr12:105109600-105116000	Weak transcription	Fetal Intestine Large	intestine
11	chr12:105109800-105116000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr12:105109800-105116200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr12:105110600-105121000	Weak transcription	Gastric	stomach
14	chr12:105111200-105117600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr12:105111800-105114400	Enhancers	Fetal Brain Female	brain
16	chr12:105112000-105115400	Enhancers	Fetal Brain Male	brain
17	chr12:105112000-105115400	Enhancers	Lung	lung
18	chr12:105112400-105114800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr12:105112600-105114400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr12:105112600-105114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:105112600-105115200	Enhancers	Spleen	Spleen
22	chr12:105112800-105115800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr12:105112800-105116000	Enhancers	Esophagus	oesophagus
24	chr12:105113000-105119800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:105113200-105116400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr12:105113200-105118600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:105113400-105115200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr12:105113400-105116400	Weak transcription	Colon Smooth Muscle	Colon
29	chr12:105113400-105116600	Weak transcription	Fetal Heart	heart
30	chr12:105113600-105114400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr12:105113600-105114400	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr12:105113600-105114800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:105113600-105115200	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr12:105113600-105115200	Flanking Active TSS	Dnd41	blood
35	chr12:105113600-105115400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr12:105113600-105115400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr12:105113600-105115400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr12:105113600-105117000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:105113600-105117000	Enhancers	HSMMtube	muscle
40	chr12:105113800-105114400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr12:105113800-105114400	Active TSS	Colonic Mucosa	Colon
42	chr12:105113800-105114400	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr12:105113800-105114400	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr12:105113800-105114600	Active TSS	Right Atrium	heart
45	chr12:105113800-105114800	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr12:105113800-105114800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr12:105113800-105114800	Flanking Active TSS	NHLF	lung
48	chr12:105113800-105115000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
49	chr12:105113800-105115200	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr12:105113800-105115200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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