Variant report
Variant | rs10161609 |
---|---|
Chromosome Location | chr13:93192936-93192937 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:93188469..93192072-chr13:93192259..93196384,5 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16947714 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs16947802 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap] |
rs2209831 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs68108040 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9589565 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv471168 | chr13:93138577-93208593 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv900904 | chr13:93138577-93208593 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv900905 | chr13:93138577-93211339 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv562728 | chr13:93142706-93208593 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv456069 | chr13:93161846-93204427 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | nsv562729 | chr13:93161846-93204427 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | esv3362695 | chr13:93192917-93193362 | Inactive region | Chromatin interactive region | n/a | n/a | n/a |
No data |