Variant report

Variant	rs10161685
Chromosome Location	chr13:97668063-97668064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11069252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12858533	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7326505	0.92[EUR][1000 genomes]
rs9300381	0.90[AFR][1000 genomes]
rs9582096	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584460	0.90[AFR][1000 genomes]
rs9584468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584470	0.92[EUR][1000 genomes]
rs9584472	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97664200-97670600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:97664200-97673000	Weak transcription	Fetal Intestine Large	intestine
3	chr13:97664600-97670400	Weak transcription	Placenta	Placenta
4	chr13:97667200-97668600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr13:97667400-97668600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:97667600-97668600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr13:97667800-97668200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
8	chr13:97667800-97668200	Enhancers	Primary T cells from cord blood	blood
9	chr13:97667800-97668400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:97667800-97668400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr13:97667800-97668400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr13:97667800-97668600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr13:97667800-97668600	Enhancers	Dnd41	blood
14	chr13:97667800-97668600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
15	chr13:97668000-97668200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr13:97668000-97668400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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