Variant report

Variant	rs10162513
Chromosome Location	chr14:71635438-71635439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71630664..71636301-chr14:71785635..71788811,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10162332	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1017023	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1017024	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11158894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158895	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622578	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11628267	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433285	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433881	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433971	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436140	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12436994	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12437099	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586505	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12591005	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177802	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17767137	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2003488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079305	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55831429	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55968807	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55979041	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56369736	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7144242	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152112	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726621	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72726627	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72726634	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs740069	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740070	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740071	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740072	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917063	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71631600-71636600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:71631800-71636600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:71632200-71636600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:71633400-71648000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:71633600-71639200	Weak transcription	Fetal Lung	lung
6	chr14:71633800-71636600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:71634600-71648200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:71634800-71635600	Active TSS	Primary T cells from cord blood	blood
9	chr14:71634800-71635800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr14:71635000-71635600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
11	chr14:71635000-71635600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:71635000-71635800	Active TSS	Duodenum Mucosa	Duodenum
13	chr14:71635200-71635600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr14:71635200-71635600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr14:71635200-71635600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr14:71635200-71635600	Enhancers	Fetal Thymus	thymus
17	chr14:71635200-71635800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr14:71635200-71635800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr14:71635200-71636000	Flanking Active TSS	Dnd41	blood
20	chr14:71635400-71635600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:71635400-71635800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr14:71635400-71635800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:71635400-71635800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr14:71635400-71636000	Enhancers	Primary hematopoietic stem cells	blood
25	chr14:71635400-71636000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr14:71635400-71636000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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