Variant report

Variant	rs10162842
Chromosome Location	chr15:34419601-34419602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34417003..34419819-chr15:34499362..34502166,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10152407	1.00[CEU][hapmap]
rs10162625	1.00[CEU][hapmap]
rs10162803	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11072967	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379654	1.00[CEU][hapmap]
rs4779658	1.00[ASN][1000 genomes]
rs4780220	1.00[ASN][1000 genomes]
rs6495649	1.00[CEU][hapmap]
rs6495650	1.00[CEU][hapmap]
rs6495652	1.00[CEU][hapmap]
rs6495653	1.00[CEU][hapmap]
rs6495654	1.00[CEU][hapmap]
rs7165738	1.00[CEU][hapmap]
rs7165973	1.00[CEU][hapmap]
rs7166135	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168168	1.00[CEU][hapmap]
rs7168707	1.00[CEU][hapmap]
rs7169802	1.00[CEU][hapmap]
rs7175383	0.81[AFR][1000 genomes]
rs7175784	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177212	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177389	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177391	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177536	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177585	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73376108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025075	1.00[CEU][hapmap]
rs8036323	1.00[CEU][hapmap]
rs8039233	1.00[CEU][hapmap]
rs8043268	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv903986	chr15:34394273-34421951	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34411800-34421000	Weak transcription	A549	lung
2	chr15:34414400-34426400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:34415400-34434600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:34415600-34421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:34415600-34421200	Weak transcription	HSMM	muscle
6	chr15:34415600-34424400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:34415600-34429200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:34415600-34431400	Weak transcription	NH-A	brain
9	chr15:34415600-34432800	Weak transcription	Osteobl	bone
10	chr15:34415800-34432800	Weak transcription	NHDF-Ad	bronchial
11	chr15:34416200-34439200	Weak transcription	HUVEC	blood vessel
12	chr15:34417600-34431400	Weak transcription	HSMMtube	muscle
13	chr15:34417600-34439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:34417800-34436800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:34419000-34422400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:34419200-34422400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:34419200-34431200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:34419400-34429200	Weak transcription	Placenta	Placenta
19	chr15:34419400-34429800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:34419400-34430600	Weak transcription	HMEC	breast
21	chr15:34419400-34434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:34419400-34441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:34419600-34426200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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