Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1016305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1248857	0.81[ASN][1000 genomes]
rs1248858	0.81[CHB][hapmap]
rs1248860	0.80[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs13081745	0.81[CHB][hapmap]
rs1872553	0.80[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1872556	0.81[CHB][hapmap]
rs2035561	0.81[CHB][hapmap]
rs2326123	0.81[CHB][hapmap]
rs4301023	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4499618	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs4856559	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs6549009	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7651996	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs765461	0.85[CHB][hapmap]
rs9816652	0.85[ASN][1000 genomes]
rs9831123	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs9834688	0.84[ASN][1000 genomes]
rs9840607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1829788	chr3:84926769-85086403	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85068600-85090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85079600-85083200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:85079600-85083600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:85079600-85086400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:85080000-85082800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:85080000-85083400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:85080400-85082800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:85081400-85088800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:85081800-85082600	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:85082000-85082600	Active TSS	Muscle Satellite Cultured Cells	--
11	chr3:85082200-85082600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:85082200-85082600	Active TSS	Brain Angular Gyrus	brain
13	chr3:85082200-85082600	Active TSS	Brain Hippocampus Middle	brain
14	chr3:85082200-85082600	Active TSS	Psoas Muscle	Psoas
15	chr3:85082200-85082800	Active TSS	Brain Anterior Caudate	brain
16	chr3:85082200-85086400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:85082200-85088800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:85082400-85082600	Enhancers	Fetal Brain Male	brain
19	chr3:85082400-85082600	Enhancers	Fetal Brain Female	brain
20	chr3:85082400-85083800	Enhancers	H1 Cell Line	embryonic stem cell

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