Variant report

Variant	rs10163503
Chromosome Location	chr17:59815916-59815917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69257652..69259560-chr17:59815915..59818733,2	MCF-7	breast:
2	chr17:59814253..59816917-chr17:59852153..59854445,2	MCF-7	breast:
3	chr17:57915950..57918644-chr17:59813284..59816425,4	MCF-7	breast:
4	chr17:59815765..59819190-chr17:59834078..59836491,3	MCF-7	breast:
5	chr17:59815384..59817910-chr9:127616869..127619165,2	MCF-7	breast:
6	chr17:59815352..59816865-chr17:59852831..59855224,2	MCF-7	breast:
7	chr17:59815633..59817764-chr20:52585119..52586784,2	MCF-7	breast:
8	chr17:59810421..59813072-chr17:59814552..59817092,2	K562	blood:
9	chr17:59814540..59816782-chr7:75931818..75934687,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000199004	Chromatin interaction
ENSG00000185650	Chromatin interaction
ENSG00000106211	Chromatin interaction
ENSG00000136492	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12945616	1.00[LWK][hapmap]
rs4988345	1.00[LWK][hapmap]
rs4988346	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv3335472	chr17:59803168-59821322	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv575841	chr17:59812748-59914681	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
6	nsv575842	chr17:59812748-59927307	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59766000-59819000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:59781600-59835400	Weak transcription	Hela-S3	cervix
3	chr17:59793200-59819400	Weak transcription	NH-A	brain
4	chr17:59793600-59821200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:59794200-59819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:59794400-59816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr17:59794400-59848200	Weak transcription	HUVEC	blood vessel
8	chr17:59797400-59817600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr17:59798800-59816400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr17:59801200-59817400	Weak transcription	Small Intestine	intestine
11	chr17:59801600-59816200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr17:59804200-59818800	Weak transcription	Brain Germinal Matrix	brain
13	chr17:59804200-59847400	Weak transcription	K562	blood
14	chr17:59804600-59834200	Weak transcription	Osteobl	bone
15	chr17:59805800-59818800	Weak transcription	Fetal Muscle Leg	muscle
16	chr17:59806200-59825600	Weak transcription	Thymus	Thymus
17	chr17:59806800-59819800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr17:59807600-59838400	Weak transcription	Fetal Stomach	stomach
19	chr17:59811600-59825200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr17:59813600-59821000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr17:59813800-59820400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr17:59813800-59823000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr17:59814000-59849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr17:59814200-59816800	Strong transcription	A549	lung
25	chr17:59814400-59816000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
26	chr17:59814400-59816800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:59814400-59816800	ZNF genes & repeats	Dnd41	blood
28	chr17:59814600-59819400	Weak transcription	Fetal Intestine Large	intestine
29	chr17:59814600-59823000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr17:59815000-59816000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
31	chr17:59815000-59824000	Weak transcription	Fetal Heart	heart
32	chr17:59815000-59839200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr17:59815200-59816600	Weak transcription	Primary T cells from cord blood	blood
34	chr17:59815200-59816800	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr17:59815200-59816800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr17:59815200-59816800	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr17:59815200-59816800	ZNF genes & repeats	Ovary	ovary
38	chr17:59815200-59820000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr17:59815200-59820200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr17:59815200-59820200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr17:59815200-59820400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr17:59815400-59816000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr17:59815400-59816000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr17:59815400-59816800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr17:59815400-59817000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr17:59815400-59818600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr17:59815400-59818800	Strong transcription	HepG2	liver
48	chr17:59815400-59820400	Strong transcription	Fetal Thymus	thymus
49	chr17:59815600-59817800	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr17:59815600-59818000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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