Variant report

Variant	rs10163688
Chromosome Location	chr18:13316256-13316257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11080644	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6505797	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2209	chr18:13276410-13316570	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13303200-13316600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr18:13303200-13318600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:13303200-13318600	Weak transcription	Right Atrium	heart
4	chr18:13303600-13318600	Weak transcription	Colon Smooth Muscle	Colon
5	chr18:13310600-13316400	Weak transcription	Left Ventricle	heart
6	chr18:13310600-13318600	Weak transcription	Right Ventricle	heart
7	chr18:13314400-13316600	ZNF genes & repeats	Dnd41	blood
8	chr18:13314400-13316800	ZNF genes & repeats	Thymus	Thymus
9	chr18:13314400-13317200	ZNF genes & repeats	Fetal Thymus	thymus
10	chr18:13314600-13317200	ZNF genes & repeats	Brain Germinal Matrix	brain
11	chr18:13314600-13317200	ZNF genes & repeats	Fetal Stomach	stomach
12	chr18:13314800-13325000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr18:13315200-13316400	Weak transcription	Primary T cells from cord blood	blood
14	chr18:13315200-13319200	Weak transcription	Spleen	Spleen
15	chr18:13315800-13316600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr18:13315800-13316800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr18:13315800-13317200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr18:13316000-13316400	ZNF genes & repeats	Fetal Heart	heart
19	chr18:13316000-13316400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
20	chr18:13316000-13317000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr18:13316200-13316600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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