Variant report

Variant	rs10163827
Chromosome Location	chr3:177588476-177588477
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11080617	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11080618	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11661559	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11662634	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11664213	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11664469	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12327306	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12605267	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12607398	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12953783	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12957380	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12960349	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12961596	0.91[ASN][1000 genomes]
rs12963426	0.93[ASN][1000 genomes]
rs12967249	0.83[AMR][1000 genomes]
rs12970503	0.91[ASN][1000 genomes]
rs13381134	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13381779	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17603207	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17659689	0.89[ASN][1000 genomes]
rs17659749	0.89[ASN][1000 genomes]
rs17659896	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2282540	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2282541	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28551661	0.93[ASN][1000 genomes]
rs28654613	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34117444	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34166083	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34302481	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35368962	0.90[ASN][1000 genomes]
rs35563947	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3809914	0.82[ASN][1000 genomes]
rs3976787	0.91[ASN][1000 genomes]
rs496270	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68004799	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71353241	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7228684	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7229869	0.83[EUR][1000 genomes]
rs7230391	0.93[ASN][1000 genomes]
rs7230435	0.81[ASN][1000 genomes]
rs7234938	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7236710	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7239486	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8083401	0.84[ASN][1000 genomes]
rs8089724	0.91[ASN][1000 genomes]
rs8090667	0.89[ASN][1000 genomes]
rs8093576	0.89[ASN][1000 genomes]
rs8566	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9950241	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10163827	CEP192	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177581400-177622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177583000-177593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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