Variant report

Variant	rs10163888
Chromosome Location	chr18:13353777-13353778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10083911	0.89[AFR][1000 genomes]
rs13381960	0.89[AFR][1000 genomes]
rs1551366	1.00[CEU][hapmap]
rs7228541	1.00[CEU][hapmap]
rs9303786	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13352400-13355000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr18:13352600-13354200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr18:13352600-13354400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr18:13352800-13354000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr18:13352800-13354400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr18:13353000-13353800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr18:13353000-13353800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr18:13353000-13354000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr18:13353000-13354200	Enhancers	Primary hematopoietic stem cells	blood
11	chr18:13353000-13354200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr18:13353000-13354200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr18:13353000-13354400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr18:13353000-13355000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr18:13353200-13353800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr18:13353200-13353800	Enhancers	Primary B cells from cord blood	blood
17	chr18:13353200-13353800	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr18:13353200-13353800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr18:13353200-13353800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr18:13353200-13353800	Enhancers	Adipose Nuclei	Adipose
21	chr18:13353200-13353800	Enhancers	Brain Hippocampus Middle	brain
22	chr18:13353200-13353800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr18:13353200-13353800	Enhancers	Right Atrium	heart
24	chr18:13353200-13353800	Flanking Active TSS	Dnd41	blood
25	chr18:13353200-13354200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr18:13353200-13354200	Enhancers	Primary T cells fromperipheralblood	blood
27	chr18:13353200-13354200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr18:13353200-13354200	Enhancers	Thymus	Thymus
29	chr18:13353200-13354800	Enhancers	Fetal Thymus	thymus
30	chr18:13353200-13355000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr18:13353200-13355000	Enhancers	Aorta	Aorta
32	chr18:13353400-13353800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr18:13353400-13353800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr18:13353400-13353800	Enhancers	Left Ventricle	heart
35	chr18:13353400-13353800	Enhancers	Psoas Muscle	Psoas
36	chr18:13353600-13353800	Enhancers	Brain Anterior Caudate	brain
37	chr18:13353600-13353800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr18:13353600-13354200	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr18:13353600-13356000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links