Variant report

Variant	rs10165449
Chromosome Location	chr2:212303073-212303074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10195573	0.84[CHB][hapmap]
rs11676241	0.85[CHB][hapmap]
rs13395652	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs4673618	0.84[CHB][hapmap];0.83[MEX][hapmap]
rs56677591	1.00[ASN][1000 genomes]
rs7592174	1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9808028	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10165449	IDH1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212302800-212303600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212303000-212304000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:212303000-212305000	Weak transcription	Brain Substantia Nigra	brain
4	chr2:212303000-212313400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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