Variant report

Variant	rs10166615
Chromosome Location	chr2:31497573-31497574
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:31495749..31498208-chr2:31503844..31506065,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10177050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10178948	1.00[EUR][1000 genomes]
rs10179054	1.00[EUR][1000 genomes]
rs10183709	1.00[EUR][1000 genomes]
rs10183716	1.00[EUR][1000 genomes]
rs10187343	1.00[EUR][1000 genomes]
rs10210639	1.00[EUR][1000 genomes]
rs11886693	0.81[AMR][1000 genomes]
rs12328982	1.00[EUR][1000 genomes]
rs13391292	1.00[EUR][1000 genomes]
rs13391297	1.00[EUR][1000 genomes]
rs13398126	1.00[EUR][1000 genomes]
rs13421107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13429494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57291246	0.91[AMR][1000 genomes]
rs57997844	1.00[EUR][1000 genomes]
rs582594	1.00[EUR][1000 genomes]
rs584875	1.00[EUR][1000 genomes]
rs586195	1.00[EUR][1000 genomes]
rs60638976	1.00[EUR][1000 genomes]
rs610240	1.00[EUR][1000 genomes]
rs611964	1.00[EUR][1000 genomes]
rs643137	1.00[EUR][1000 genomes]
rs643577	1.00[EUR][1000 genomes]
rs6543623	1.00[EUR][1000 genomes]
rs6543624	1.00[EUR][1000 genomes]
rs6735512	1.00[EUR][1000 genomes]
rs72861169	0.82[AMR][1000 genomes]
rs73925235	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31459400-31498600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:31463600-31501400	Weak transcription	Pancreas	Pancrea
3	chr2:31468200-31501600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:31482000-31501000	Weak transcription	Fetal Intestine Large	intestine
5	chr2:31482600-31501400	Weak transcription	Liver	Liver
6	chr2:31486600-31510000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:31490000-31502400	Weak transcription	Spleen	Spleen
8	chr2:31490600-31498600	Weak transcription	Brain Germinal Matrix	brain
9	chr2:31491400-31498600	Enhancers	Placenta	Placenta
10	chr2:31491400-31499800	Weak transcription	Fetal Brain Female	brain
11	chr2:31492400-31507800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:31492800-31510600	Weak transcription	Aorta	Aorta
13	chr2:31494400-31498600	Weak transcription	Fetal Kidney	kidney
14	chr2:31494400-31505600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:31494800-31498400	Enhancers	Fetal Stomach	stomach
16	chr2:31495600-31499200	Enhancers	Fetal Lung	lung
17	chr2:31495800-31509800	Weak transcription	Esophagus	oesophagus
18	chr2:31496600-31498000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:31497000-31498000	Weak transcription	Fetal Heart	heart
20	chr2:31497000-31498000	Weak transcription	Left Ventricle	heart
21	chr2:31497000-31501600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:31497000-31510400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:31497200-31497600	Weak transcription	Right Ventricle	heart
24	chr2:31497200-31502600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr2:31497400-31497600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:31497400-31497800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr2:31497400-31498800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:31497400-31501000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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