Variant report

Variant	rs10166617
Chromosome Location	chr2:185528045-185528046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10192442	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10210865	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898849	1.00[YRI][hapmap]
rs13394608	1.00[YRI][hapmap]
rs13414376	1.00[YRI][hapmap]
rs13426842	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041391	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185527600-185528200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:185527800-185528200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:185527800-185528200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:185527800-185528200	ZNF genes & repeats	Fetal Stomach	stomach
5	chr2:185527800-185528400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:185528000-185528200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:185528000-185528200	ZNF genes & repeats	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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