Variant report

Variant	rs10167619
Chromosome Location	chr2:11837378-11837379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10084363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10168372	0.83[EUR][1000 genomes]
rs10179409	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11683832	0.99[ASN][1000 genomes]
rs11886222	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13387137	0.81[ASN][1000 genomes]
rs13407243	0.81[EUR][1000 genomes]
rs13407481	0.81[EUR][1000 genomes]
rs13420573	0.81[EUR][1000 genomes]
rs13431864	0.81[EUR][1000 genomes]
rs4296403	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4564747	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57055669	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57281558	0.84[EUR][1000 genomes]
rs59844400	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66763856	0.80[EUR][1000 genomes]
rs6716051	0.84[EUR][1000 genomes]
rs6716192	0.84[EUR][1000 genomes]
rs67979481	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7570592	0.81[EUR][1000 genomes]
rs7574891	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7580112	0.81[EUR][1000 genomes]
rs7599540	0.82[EUR][1000 genomes]
rs9287737	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9287738	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv469449	chr2:11808654-11854012	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv580972	chr2:11808654-11854012	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv10240	chr2:11832427-11837975	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11829200-11838400	Weak transcription	Fetal Lung	lung
2	chr2:11829400-11841800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:11833600-11838000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:11833600-11841800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:11833800-11837400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:11833800-11838000	Weak transcription	Liver	Liver
7	chr2:11833800-11838000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:11835200-11837600	Enhancers	Psoas Muscle	Psoas
9	chr2:11835400-11839200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:11836000-11839000	Enhancers	Primary hematopoietic stem cells	blood
11	chr2:11836400-11839000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:11836600-11837400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:11836600-11837400	Enhancers	Brain Anterior Caudate	brain
14	chr2:11836600-11837800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr2:11836600-11837800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr2:11836600-11838000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:11836600-11838000	Genic enhancers	Right Atrium	heart
18	chr2:11836600-11838200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:11836600-11838200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:11836600-11838200	Enhancers	Ovary	ovary
21	chr2:11836600-11838200	Enhancers	HMEC	breast
22	chr2:11836600-11838400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:11836600-11838400	Bivalent Enhancer	Fetal Stomach	stomach
24	chr2:11836600-11838400	Enhancers	Fetal Thymus	thymus
25	chr2:11836600-11838600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:11836600-11838600	Enhancers	A549	lung
27	chr2:11836600-11838800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:11836600-11839000	Enhancers	Esophagus	oesophagus
29	chr2:11836600-11839000	Enhancers	NHDF-Ad	bronchial
30	chr2:11836600-11839000	Enhancers	NHEK	skin
31	chr2:11836600-11839000	Enhancers	NHLF	lung
32	chr2:11836600-11839200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr2:11836600-11839200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:11836800-11837400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:11836800-11837400	Enhancers	Stomach Smooth Muscle	stomach
36	chr2:11836800-11837600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr2:11836800-11837600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:11836800-11837800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:11836800-11837800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr2:11836800-11837800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:11836800-11837800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:11836800-11837800	Enhancers	Gastric	stomach
43	chr2:11836800-11837800	Enhancers	Pancreas	Pancrea
44	chr2:11836800-11837800	Enhancers	NH-A	brain
45	chr2:11836800-11838000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr2:11836800-11838000	Enhancers	Rectal Smooth Muscle	rectum
47	chr2:11836800-11838000	Enhancers	HUVEC	blood vessel
48	chr2:11836800-11838400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr2:11836800-11838400	Enhancers	Left Ventricle	heart
50	chr2:11836800-11838400	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links