Variant report

Variant	rs10167802
Chromosome Location	chr2:86519732-86519733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86519380..86521878-chr2:86524185..86527077,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12328643	1.00[AMR][1000 genomes]
rs12329034	1.00[AMR][1000 genomes]
rs13388621	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401290	0.83[AFR][1000 genomes]
rs13418778	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027099	0.83[AFR][1000 genomes]
rs17027101	0.83[AFR][1000 genomes]
rs17027112	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28645407	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55654200	0.80[AFR][1000 genomes]
rs55721426	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60995751	1.00[AMR][1000 genomes]
rs61708076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73944919	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73945268	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86508000-86520200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:86508200-86519800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:86511200-86524000	Weak transcription	Aorta	Aorta
4	chr2:86512000-86521800	Weak transcription	Fetal Intestine Small	intestine
5	chr2:86512400-86524000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:86513400-86520200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:86514000-86529200	Weak transcription	Pancreas	Pancrea
8	chr2:86517400-86521200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr2:86517400-86521200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr2:86517600-86520600	Enhancers	Psoas Muscle	Psoas
11	chr2:86517600-86522000	Enhancers	Stomach Smooth Muscle	stomach
12	chr2:86517800-86524000	Weak transcription	Right Atrium	heart
13	chr2:86518000-86521200	Enhancers	Brain Germinal Matrix	brain
14	chr2:86518400-86520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:86518400-86521200	Enhancers	Fetal Brain Male	brain
16	chr2:86518400-86527600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:86518600-86522000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:86518800-86520400	Weak transcription	HSMMtube	muscle
19	chr2:86519000-86519800	Weak transcription	Fetal Muscle Leg	muscle
20	chr2:86519000-86520000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:86519000-86520600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:86519200-86520200	Weak transcription	Brain Substantia Nigra	brain
23	chr2:86519200-86520200	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:86519600-86520400	Enhancers	Right Ventricle	heart
25	chr2:86519600-86520600	Enhancers	Left Ventricle	heart
26	chr2:86519600-86521200	Enhancers	Fetal Brain Female	brain

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