Variant report
| Variant | rs10167893 |
|---|---|
| Chromosome Location | chr2:95413503-95413504 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | PAX5 | chr2:95413450-95414160 | GM12878 | blood: | n/a | n/a |
| 2 | PAX5 | chr2:95413445-95413720 | GM12878 | blood: | n/a | n/a |
| 3 | SP1 | chr2:95413472-95413761 | GM12878 | blood: | n/a | n/a |
| 4 | PAX5 | chr2:95413497-95413785 | GM12878 | blood: | n/a | n/a |
| 5 | POU2F2 | chr2:95413451-95413849 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234837 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10182076 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10184908 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10193770 | 0.83[EUR][1000 genomes] |
| rs10204549 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11164056 | 0.83[ASN][1000 genomes] |
| rs11885687 | 0.96[EUR][1000 genomes] |
| rs12717791 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13382748 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13389674 | 0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13415471 | 0.84[EUR][1000 genomes] |
| rs13429295 | 0.93[EUR][1000 genomes] |
| rs13430384 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs58579958 | 0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000661 | chr2:95327875-95739468 | Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005016 | chr2:95327875-95914467 | Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 3 | esv2759075 | chr2:95358799-95620108 | Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
