The 2.0 version of rSNPBase

Variant report

Variant rs10168401
Chromosome Location chr2:32980395-32980396
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:32868800-32980800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr2:32876400-32980800 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr2:32888600-32981800 Weak transcription Gastric stomach
4 chr2:32922400-33006000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr2:32929000-33003600 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr2:32929800-33016800 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr2:32938200-32998000 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr2:32938200-33016200 Weak transcription HUVEC blood vessel
9 chr2:32939200-32980800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr2:32945000-33028200 Weak transcription Aorta Aorta
11 chr2:32951000-32985400 Weak transcription Esophagus oesophagus
12 chr2:32951000-33050000 Weak transcription Rectal Smooth Muscle rectum
13 chr2:32952400-32984800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr2:32955200-32983400 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr2:32957000-32980400 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr2:32958800-32985000 Weak transcription Hela-S3 cervix
17 chr2:32960000-32981000 Weak transcription Primary T helper naive cells from peripheral blood blood
18 chr2:32960000-32998000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr2:32960000-33006000 Weak transcription Colon Smooth Muscle Colon
20 chr2:32961600-32983400 Weak transcription Small Intestine intestine
21 chr2:32965400-32980800 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr2:32967000-32980800 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr2:32967000-32983400 Weak transcription Fetal Muscle Trunk muscle
24 chr2:32967000-32985000 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr2:32968200-32981000 Weak transcription Primary T cells fromperipheralblood blood
26 chr2:32969000-33009800 Weak transcription Fetal Thymus thymus
27 chr2:32970400-32993800 Weak transcription Right Ventricle heart
28 chr2:32970600-32980600 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr2:32971000-32985400 Weak transcription Left Ventricle heart
30 chr2:32971000-32998200 Weak transcription Psoas Muscle Psoas
31 chr2:32971200-33003600 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr2:32971400-32981000 Weak transcription Liver Liver
33 chr2:32971400-32997800 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr2:32971800-32986000 Weak transcription Brain Angular Gyrus brain
35 chr2:32972200-32984200 Weak transcription Placenta Amnion Placenta Amnion
36 chr2:32974400-32981200 Weak transcription Ovary ovary
37 chr2:32974600-32980600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr2:32974600-32980800 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr2:32974800-32980800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr2:32975000-32981200 Weak transcription Duodenum Mucosa Duodenum
41 chr2:32975600-32995200 Weak transcription HSMMtube muscle
42 chr2:32975800-32981200 Weak transcription GM12878-XiMat blood
43 chr2:32976200-32980800 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr2:32976400-32984000 Weak transcription K562 blood
45 chr2:32976400-32986200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr2:32976400-33006000 Weak transcription NHEK skin
47 chr2:32976600-32982000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr2:32977200-32981200 Weak transcription Primary B cells from peripheral blood blood
49 chr2:32977200-32982200 Weak transcription Primary B cells from cord blood blood
50 chr2:32977400-32980800 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015