Variant report

Variant	rs10168590
Chromosome Location	chr2:212818506-212818507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10178890	1.00[YRI][hapmap]
rs10189157	1.00[YRI][hapmap]
rs10192870	1.00[YRI][hapmap]
rs10201700	1.00[YRI][hapmap]
rs11885603	1.00[AMR][1000 genomes]
rs11891843	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11896025	1.00[YRI][hapmap]
rs12328890	1.00[YRI][hapmap]
rs13394886	1.00[YRI][hapmap]
rs13395293	1.00[YRI][hapmap]
rs13407093	1.00[YRI][hapmap]
rs13411338	1.00[YRI][hapmap]
rs13414897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13420644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13422186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379066	1.00[AMR][1000 genomes]
rs28535995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212814600-212819800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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