Variant report

Variant	rs10169148
Chromosome Location	chr2:85912309-85912310
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GNLY-2	chr2:85912298-85912344	NONHSAT072039

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10206742	0.89[YRI][hapmap];0.93[AMR][1000 genomes]
rs10206759	0.89[YRI][hapmap];0.93[AMR][1000 genomes]
rs10209258	0.89[YRI][hapmap];0.93[AMR][1000 genomes]
rs13427385	0.93[AMR][1000 genomes]
rs6747600	0.89[YRI][hapmap];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874459	chr2:85828014-85939207	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874460	chr2:85828014-85941074	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874461	chr2:85853653-85939207	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv874462	chr2:85853653-85941074	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv874463	chr2:85853653-85946708	Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv874465	chr2:85898898-85939207	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv2812	chr2:85899944-85929267	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv874466	chr2:85909026-85939207	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85906400-85914000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:85906800-85914400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:85906800-85918400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:85908000-85914800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:85908600-85914200	Weak transcription	Brain Angular Gyrus	brain
6	chr2:85908800-85914000	Weak transcription	Brain Substantia Nigra	brain
7	chr2:85908800-85914200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:85909000-85914000	Weak transcription	NHLF	lung
9	chr2:85909000-85914200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:85909200-85913800	Weak transcription	A549	lung
11	chr2:85909200-85914200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:85909200-85921200	Weak transcription	Lung	lung
13	chr2:85909400-85913800	Weak transcription	Hela-S3	cervix
14	chr2:85909600-85914000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:85909600-85914200	Weak transcription	Osteobl	bone
16	chr2:85909800-85914000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr2:85909800-85914200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:85909800-85914600	Weak transcription	Psoas Muscle	Psoas
19	chr2:85909800-85920800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr2:85911600-85913400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:85912200-85912400	Enhancers	GM12878-XiMat	blood
22	chr2:85912200-85914400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr2:85912200-85920600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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