Variant report

Variant	rs10169914
Chromosome Location	chr2:174094129-174094130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:174091632..174094180-chr2:174097237..174099910,2	MCF-7	breast:
2	chr2:174088206..174090111-chr2:174093150..174095218,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16861406	0.91[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs16861417	0.86[CHB][hapmap]
rs2119123	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs2119124	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs3739103	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs3754737	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs3754738	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs3769150	0.96[CHB][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3769151	0.95[CHB][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3769152	0.95[CHB][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3769154	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3820831	0.86[CHB][hapmap]
rs3820832	0.96[CHB][hapmap];0.87[ASN][1000 genomes]
rs41268713	0.94[ASN][1000 genomes]
rs4972538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72625241	0.81[ASN][1000 genomes]
rs72625242	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174048600-174095200	Weak transcription	Thymus	Thymus
2	chr2:174058000-174112800	Weak transcription	Spleen	Spleen
3	chr2:174061200-174097600	Weak transcription	Lung	lung
4	chr2:174063600-174097600	Weak transcription	HSMM	muscle
5	chr2:174063800-174095000	Weak transcription	Right Ventricle	heart
6	chr2:174064200-174097600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:174069400-174097000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:174069400-174097600	Weak transcription	Primary B cells from cord blood	blood
9	chr2:174069600-174096600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:174071800-174094200	Weak transcription	Fetal Thymus	thymus
11	chr2:174072200-174095400	Weak transcription	Right Atrium	heart
12	chr2:174075400-174097600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:174077400-174096400	Weak transcription	Hela-S3	cervix
14	chr2:174078800-174097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:174082200-174095800	Weak transcription	Fetal Stomach	stomach
16	chr2:174082200-174097400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:174083400-174100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:174083400-174136400	Weak transcription	Esophagus	oesophagus
19	chr2:174083600-174103400	Weak transcription	NHLF	lung
20	chr2:174083800-174095000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:174083800-174097600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:174083800-174097600	Weak transcription	NHDF-Ad	bronchial
23	chr2:174083800-174119200	Weak transcription	HMEC	breast
24	chr2:174084000-174095200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr2:174084000-174095800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:174084000-174095800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr2:174084400-174094200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr2:174084600-174097600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr2:174086200-174095000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr2:174086200-174101600	Weak transcription	Ovary	ovary
31	chr2:174086400-174095800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:174086400-174095800	Weak transcription	Colon Smooth Muscle	Colon
33	chr2:174086400-174096400	Weak transcription	Dnd41	blood
34	chr2:174086400-174098400	Weak transcription	GM12878-XiMat	blood
35	chr2:174086600-174095800	Weak transcription	Adipose Nuclei	Adipose
36	chr2:174087000-174096800	Weak transcription	Placenta	Placenta
37	chr2:174088200-174095800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:174088400-174097600	Weak transcription	Osteobl	bone
39	chr2:174088800-174095800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr2:174089400-174097400	Weak transcription	NHEK	skin
41	chr2:174089600-174103000	Weak transcription	K562	blood
42	chr2:174089800-174096800	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr2:174090200-174095600	Weak transcription	Fetal Heart	heart
44	chr2:174090200-174095800	Weak transcription	HSMMtube	muscle
45	chr2:174090400-174095800	Weak transcription	Left Ventricle	heart
46	chr2:174091800-174094600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr2:174092000-174096000	Weak transcription	Stomach Mucosa	stomach
48	chr2:174092200-174094400	Enhancers	Brain Anterior Caudate	brain
49	chr2:174092200-174095000	Weak transcription	Primary T cells from cord blood	blood
50	chr2:174092200-174109400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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