Variant report

Variant	rs10169945
Chromosome Location	chr2:11213475-11213476
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11213126..11213688-chr2:11263390..11264093,2	MCF-7	breast:
2	chr2:11213310..11214023-chr2:11269749..11271029,3	MCF-7	breast:
3	chr2:11212005..11213742-chr2:11263802..11265970,2	MCF-7	breast:
4	chr2:11212343..11214819-chr2:11221166..11223502,2	MCF-7	breast:
5	chr2:11095672..11098504-chr2:11211086..11213871,2	MCF-7	breast:
6	chr2:11213355..11214082-chr2:11264187..11265377,5	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1108933	0.89[EUR][1000 genomes]
rs12986438	0.84[EUR][1000 genomes]
rs2884357	0.89[EUR][1000 genomes]
rs6432167	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6432168	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs880327	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11207800-11214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:11210400-11213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:11211200-11213600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:11211400-11213600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr2:11211400-11213800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:11211400-11214000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:11211400-11214000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:11211600-11214400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:11211800-11213800	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:11212600-11213600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:11212600-11214000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:11212600-11214600	Enhancers	Placenta	Placenta
13	chr2:11212600-11214600	Enhancers	HUVEC	blood vessel
14	chr2:11212800-11213800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:11212800-11214800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:11213000-11213600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr2:11213000-11214000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:11213000-11214200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:11213200-11213600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr2:11213200-11213600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr2:11213200-11213800	Enhancers	A549	lung
22	chr2:11213200-11213800	Enhancers	Osteobl	bone
23	chr2:11213200-11214600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr2:11213400-11213600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr2:11213400-11213600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr2:11213400-11213600	Flanking Active TSS	Ovary	ovary
27	chr2:11213400-11213600	Enhancers	HMEC	breast
28	chr2:11213400-11213800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr2:11213400-11214000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:11213400-11214000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:11213400-11214000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:11213400-11214000	Bivalent Enhancer	Stomach Mucosa	stomach
33	chr2:11213400-11214200	Weak transcription	Spleen	Spleen
34	chr2:11213400-11214400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr2:11213400-11214400	Enhancers	NH-A	brain
36	chr2:11213400-11214600	Enhancers	Fetal Lung	lung
37	chr2:11213400-11214600	Enhancers	NHLF	lung

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