Variant report
| Variant | rs10171160 |
|---|---|
| Chromosome Location | chr2:113709004-113709005 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:113703112..113705679-chr2:113706135..113709109,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10166695 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10174364 | 1.00[AMR][1000 genomes] |
| rs10186376 | 1.00[AMR][1000 genomes] |
| rs13384351 | 1.00[AMR][1000 genomes] |
| rs13388479 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13402882 | 1.00[AMR][1000 genomes] |
| rs13414333 | 0.89[LWK][hapmap] |
| rs2464913 | 1.00[LWK][hapmap];0.80[MKK][hapmap] |
| rs2466448 | 1.00[LWK][hapmap];0.80[MKK][hapmap] |
| rs2708947 | 0.95[LWK][hapmap] |
| rs2708957 | 1.00[LWK][hapmap];0.80[MKK][hapmap] |
| rs2708958 | 0.82[LWK][hapmap];0.80[MKK][hapmap] |
| rs2708960 | 0.80[MKK][hapmap] |
| rs2708961 | 0.82[LWK][hapmap];0.80[MKK][hapmap] |
| rs2708962 | 0.82[LWK][hapmap];0.80[MKK][hapmap] |
| rs2723168 | 0.90[LWK][hapmap] |
| rs2723175 | 0.80[MKK][hapmap] |
| rs2723177 | 0.95[LWK][hapmap] |
| rs2723183 | 0.95[LWK][hapmap] |
| rs2723187 | 0.95[LWK][hapmap] |
| rs2723189 | 0.95[LWK][hapmap] |
| rs2723192 | 0.95[LWK][hapmap] |
| rs58279921 | 1.00[AMR][1000 genomes] |
| rs72942421 | 1.00[AMR][1000 genomes] |
| rs72942463 | 1.00[AMR][1000 genomes] |
| rs73955104 | 1.00[AMR][1000 genomes] |
| rs73955105 | 1.00[AMR][1000 genomes] |
| rs9653424 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532471 | chr2:113682449-113862981 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv997348 | chr2:113688093-113986508 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:113703000-113711400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
