Variant report

Variant	rs10171163
Chromosome Location	chr2:180243224-180243225
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10187146	0.93[ASN][1000 genomes]
rs10192139	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10194876	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10206292	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12104796	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13390979	0.92[ASN][1000 genomes]
rs2037241	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35499182	0.92[ASN][1000 genomes]
rs6731104	0.95[ASN][1000 genomes]
rs72952348	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004693	chr2:179933683-180265288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180242600-180243600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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