Variant report

Variant	rs10171377
Chromosome Location	chr2:77437279-77437280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10165731	0.83[CEU][hapmap]
rs10168749	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10172757	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10172843	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10173024	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10193753	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10195882	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10196405	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10200491	0.96[CEU][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11887390	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12614641	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12616014	0.85[EUR][1000 genomes]
rs12617818	0.83[CEU][hapmap]
rs12621843	0.82[CEU][hapmap]
rs12713902	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs12992638	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13001521	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13007978	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13022425	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13026568	0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13031572	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13393954	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13417062	0.85[YRI][hapmap]
rs1439718	0.96[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1439721	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1561527	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1561528	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1837426	0.82[CEU][hapmap]
rs1946879	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2028350	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2119032	0.89[CEU][hapmap]
rs2861012	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2901836	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4369888	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4423624	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4459758	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4606962	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4625937	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4852430	0.89[CEU][hapmap]
rs4853304	0.83[CEU][hapmap]
rs4853309	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5018506	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5018507	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6547129	0.89[CEU][hapmap]
rs6547133	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6705164	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6705337	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6706982	0.89[ASN][1000 genomes]
rs6710391	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6712838	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6713173	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6751463	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs6754448	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7582756	0.83[CEU][hapmap]
rs7603914	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs768880	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874333	chr2:77315349-77798886	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv518504	chr2:77326832-78172786	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1004938	chr2:77347740-78186543	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv535783	chr2:77347740-78186543	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv529904	chr2:77347741-78186542	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv997329	chr2:77354560-78176285	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1005392	chr2:77391139-77441268	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv874335	chr2:77404112-77488500	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77436000-77438600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr2:77436400-77437800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:77436600-77439000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:77437000-77438200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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