Variant report

Variant	rs10172908
Chromosome Location	chr2:134281355-134281356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:134279989..134282547-chr2:134284755..134287346,3	K562	blood:

Variant related genes	Relation type
ENSG00000176771	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10176630	1.00[EUR][1000 genomes]
rs10179509	1.00[EUR][1000 genomes]
rs10180776	1.00[EUR][1000 genomes]
rs10182352	1.00[EUR][1000 genomes]
rs10204302	1.00[EUR][1000 genomes]
rs11904353	1.00[EUR][1000 genomes]
rs13383175	1.00[EUR][1000 genomes]
rs13383603	1.00[EUR][1000 genomes]
rs13396221	1.00[EUR][1000 genomes]
rs13402934	1.00[EUR][1000 genomes]
rs13406195	1.00[EUR][1000 genomes]
rs13406470	1.00[EUR][1000 genomes]
rs13410388	1.00[EUR][1000 genomes]
rs13419194	1.00[EUR][1000 genomes]
rs13432659	1.00[EUR][1000 genomes]
rs1897430	1.00[EUR][1000 genomes]
rs1897431	1.00[EUR][1000 genomes]
rs28420171	1.00[EUR][1000 genomes]
rs28634361	1.00[EUR][1000 genomes]
rs6718180	1.00[EUR][1000 genomes]
rs6727895	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997821	chr2:133868822-134360220	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535927	chr2:133868822-134360220	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2830192	chr2:134259612-134311713	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134268200-134290000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:134274200-134281600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:134279000-134281600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:134280600-134281600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr2:134280800-134281400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr2:134280800-134281400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:134280800-134281400	Enhancers	Ovary	ovary
8	chr2:134280800-134281600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr2:134280800-134281600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr2:134280800-134282400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:134281200-134281400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
12	chr2:134281200-134281400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
13	chr2:134281200-134281400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr2:134281200-134281400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
15	chr2:134281200-134282600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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