Variant report

Variant	rs10173101
Chromosome Location	chr2:57803544-57803545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VRK2-13	chr2:57803525-57803591	l_1838_chr2:57801423-57806788_testes

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10166772	0.84[EUR][1000 genomes]
rs10173141	0.81[EUR][1000 genomes]
rs10173972	0.82[EUR][1000 genomes]
rs10193372	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10193531	0.80[EUR][1000 genomes]
rs10196737	0.86[EUR][1000 genomes]
rs10196912	0.81[EUR][1000 genomes]
rs10198189	0.84[EUR][1000 genomes]
rs10199287	0.81[EUR][1000 genomes]
rs10200037	0.80[EUR][1000 genomes]
rs10200048	0.81[EUR][1000 genomes]
rs10439484	0.82[EUR][1000 genomes]
rs11898116	0.81[EUR][1000 genomes]
rs12328176	0.83[EUR][1000 genomes]
rs12620981	0.86[EUR][1000 genomes]
rs13388436	0.82[CHB][hapmap]
rs13430995	0.83[EUR][1000 genomes]
rs1358361	0.84[EUR][1000 genomes]
rs1405823	0.84[EUR][1000 genomes]
rs1471256	0.81[ASN][1000 genomes]
rs1527618	0.82[EUR][1000 genomes]
rs1852563	0.82[EUR][1000 genomes]
rs1918453	0.84[EUR][1000 genomes]
rs2204625	0.84[EUR][1000 genomes]
rs28418278	0.81[ASN][1000 genomes]
rs3942515	0.83[EUR][1000 genomes]
rs5023704	0.84[EUR][1000 genomes]
rs6731716	0.80[EUR][1000 genomes]
rs6746760	0.82[EUR][1000 genomes]
rs7564114	0.82[EUR][1000 genomes]
rs7568237	0.84[EUR][1000 genomes]
rs7577676	0.84[EUR][1000 genomes]
rs7589785	0.84[EUR][1000 genomes]
rs7594558	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999898	chr2:57193127-57901238	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535729	chr2:57193127-57901238	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834137	chr2:57683649-57913898	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874193	chr2:57758608-58066673	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1007295	chr2:57784866-57813785	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2763654	chr2:57784878-57813797	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv535733	chr2:57785257-57810547	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv874194	chr2:57793672-57896756	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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