Variant report

Variant	rs10173188
Chromosome Location	chr2:62945136-62945137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:62931680..62934441-chr2:62944780..62947311,3	K562	blood:
2	chr2:62939404..62942481-chr2:62944890..62949579,4	K562	blood:
3	chr2:62940211..62942410-chr2:62944574..62946461,2	MCF-7	breast:
4	chr2:62931968..62934937-chr2:62943624..62945641,3	MCF-7	breast:
5	chr2:62931680..62936564-chr2:62937954..62947758,18	K562	blood:

Variant related genes	Relation type
ENSG00000115504	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10166922	1.00[AMR][1000 genomes]
rs13400540	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916190	chr2:62233785-63006200	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv932487	chr2:62258290-63006200	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	esv3430784	chr2:62945084-62945423	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:62934200-62945800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:62934200-62957800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:62934200-62957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:62934400-62957800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr2:62934600-62945400	Weak transcription	Fetal Thymus	thymus
6	chr2:62934600-62947400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr2:62934600-62951600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:62934600-62951800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:62934600-62951800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:62934600-62951800	Weak transcription	Esophagus	oesophagus
11	chr2:62934600-62951800	Weak transcription	Left Ventricle	heart
12	chr2:62934600-62952400	Weak transcription	Gastric	stomach
13	chr2:62934600-62957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:62934600-62957800	Weak transcription	Thymus	Thymus
15	chr2:62934600-62957800	Weak transcription	HSMMtube	muscle
16	chr2:62934800-62951800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:62935000-62948400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:62935200-62949000	Weak transcription	Fetal Intestine Large	intestine
19	chr2:62935800-62957800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:62936000-62951800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:62936200-62950200	Weak transcription	Brain Anterior Caudate	brain
22	chr2:62936200-62957800	Weak transcription	Small Intestine	intestine
23	chr2:62936400-62949800	Weak transcription	Fetal Lung	lung
24	chr2:62936400-62951400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:62936400-62951800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr2:62936400-62957800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr2:62936400-62957800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr2:62936600-62951800	Weak transcription	Pancreas	Pancrea
29	chr2:62936600-62957800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr2:62936600-62957800	Weak transcription	Hela-S3	cervix
31	chr2:62937200-62945800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr2:62937200-62951400	Weak transcription	Fetal Heart	heart
33	chr2:62937200-62957800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr2:62937200-62957800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr2:62937400-62947200	Weak transcription	Primary T cells from cord blood	blood
36	chr2:62937400-62950000	Weak transcription	Primary B cells from cord blood	blood
37	chr2:62937400-62957800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:62938000-62951600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr2:62938600-62957800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr2:62938800-62950000	Weak transcription	Brain Germinal Matrix	brain
41	chr2:62939000-62949800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr2:62939200-62946400	Weak transcription	Brain Angular Gyrus	brain
43	chr2:62939400-62948200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:62939400-62949600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:62939400-62951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr2:62939400-62952200	Weak transcription	Fetal Brain Male	brain
47	chr2:62939600-62946000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr2:62939600-62948400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr2:62939600-62949400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr2:62939600-62952400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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