Variant report

Variant	rs10173519
Chromosome Location	chr2:10331919-10331920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10187710	0.80[YRI][hapmap]
rs13383316	0.82[ASW][hapmap];0.83[GIH][hapmap];0.91[MKK][hapmap];0.81[YRI][hapmap]
rs13407907	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873634	chr2:10275814-10337034	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv873636	chr2:10300390-10331919	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv3340132	chr2:10328101-10332799	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
5	esv3372133	chr2:10328701-10332599	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10290200-10351400	Strong transcription	Dnd41	blood
2	chr2:10302400-10337600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:10304400-10339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:10311800-10337000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:10313000-10344400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:10314000-10340400	Weak transcription	HepG2	liver
7	chr2:10320600-10337200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:10320800-10332400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:10320800-10336800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:10321800-10333400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:10321800-10338000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:10325400-10333000	Weak transcription	Fetal Lung	lung
13	chr2:10325600-10342800	Weak transcription	Fetal Brain Female	brain
14	chr2:10326600-10339400	Strong transcription	Thymus	Thymus
15	chr2:10327600-10333600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:10328000-10333400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:10328200-10336600	Weak transcription	Brain Germinal Matrix	brain
18	chr2:10328400-10332600	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:10328800-10336600	Weak transcription	Gastric	stomach
20	chr2:10329000-10337200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:10329800-10333600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:10330800-10334000	Weak transcription	Fetal Kidney	kidney
23	chr2:10331000-10332800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr2:10331400-10332800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:10331600-10332000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr2:10331600-10332000	Enhancers	Right Ventricle	heart
27	chr2:10331600-10332200	Strong transcription	Fetal Intestine Small	intestine
28	chr2:10331800-10332000	Enhancers	Esophagus	oesophagus
29	chr2:10331800-10332400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr2:10331800-10333600	Weak transcription	Fetal Thymus	thymus
31	chr2:10331800-10333800	Weak transcription	Spleen	Spleen

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