Variant report

Variant	rs10173961
Chromosome Location	chr2:58960541-58960542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17049707	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv528866	chr2:58955953-58975143	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58954600-58963200	Enhancers	Primary hematopoietic stem cells	blood
2	chr2:58955000-58964400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:58958800-58961400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:58959200-58962800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:58959800-58960600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:58959800-58960600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:58959800-58962600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:58960000-58960800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:58960200-58960800	Weak transcription	K562	blood
10	chr2:58960200-58961200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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