Variant report

Variant	rs10174665
Chromosome Location	chr2:205536385-205536386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205529750..205532118-chr2:205534862..205537646,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10168631	1.00[EUR][1000 genomes]
rs10179131	1.00[EUR][1000 genomes]
rs10180863	1.00[EUR][1000 genomes]
rs10184096	1.00[EUR][1000 genomes]
rs10190242	1.00[EUR][1000 genomes]
rs10207338	1.00[EUR][1000 genomes]
rs12328281	1.00[EUR][1000 genomes]
rs13387065	1.00[EUR][1000 genomes]
rs13393921	1.00[EUR][1000 genomes]
rs13396823	1.00[EUR][1000 genomes]
rs13409407	1.00[EUR][1000 genomes]
rs13412778	1.00[EUR][1000 genomes]
rs13417497	1.00[EUR][1000 genomes]
rs13432594	1.00[EUR][1000 genomes]
rs17595379	1.00[EUR][1000 genomes]
rs28538804	1.00[EUR][1000 genomes]
rs28751884	1.00[EUR][1000 genomes]
rs34575634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60899945	1.00[EUR][1000 genomes]
rs6718622	1.00[EUR][1000 genomes]
rs6755557	1.00[EUR][1000 genomes]
rs73059097	1.00[EUR][1000 genomes]
rs73059099	1.00[EUR][1000 genomes]
rs7591676	1.00[EUR][1000 genomes]
rs9653255	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205520800-205542800	Weak transcription	Psoas Muscle	Psoas
2	chr2:205521000-205546200	Weak transcription	Aorta	Aorta
3	chr2:205528000-205546200	Weak transcription	Pancreas	Pancrea
4	chr2:205530400-205538000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:205531000-205538200	Weak transcription	Osteobl	bone
6	chr2:205531000-205538400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:205531200-205538400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:205531200-205545200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:205531600-205539000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:205531800-205537600	Weak transcription	Fetal Kidney	kidney
11	chr2:205531800-205538000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:205531800-205538200	Weak transcription	NHDF-Ad	bronchial
13	chr2:205532200-205537000	Enhancers	Liver	Liver
14	chr2:205532200-205539800	Enhancers	HUVEC	blood vessel
15	chr2:205533200-205537400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:205534800-205538200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:205534800-205538800	Weak transcription	NHLF	lung
18	chr2:205535000-205536400	Enhancers	Gastric	stomach
19	chr2:205535200-205538200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr2:205535200-205545200	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:205535400-205537400	Weak transcription	HSMM	muscle
22	chr2:205535400-205542200	Weak transcription	HSMMtube	muscle
23	chr2:205535400-205545600	Weak transcription	Fetal Lung	lung
24	chr2:205535600-205536400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr2:205535800-205538200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr2:205535800-205538400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr2:205536000-205538000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:205536000-205538200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:205536000-205538400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:205536200-205536400	Enhancers	A549	lung
31	chr2:205536200-205536600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:205536200-205537400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr2:205536200-205537400	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links