Variant report

Variant	rs10174836
Chromosome Location	chr2:151115206-151115207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10170246	0.83[EUR][1000 genomes]
rs10184785	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10190277	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10195650	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10207680	0.86[EUR][1000 genomes]
rs1031212	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1031213	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1031214	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1031215	0.83[EUR][1000 genomes]
rs1031216	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10930038	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1155072	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11682154	0.83[EUR][1000 genomes]
rs11687868	0.97[EUR][1000 genomes]
rs11694747	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11886061	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11886070	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12692632	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12692633	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12692644	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12986816	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12996112	0.83[EUR][1000 genomes]
rs13024074	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13028397	0.83[EUR][1000 genomes]
rs13419478	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1348741	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1374157	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2376603	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4260269	0.97[EUR][1000 genomes]
rs4283445	0.86[CEU][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4295034	0.86[CEU][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4296450	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4318407	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4434022	0.86[CEU][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4435478	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4461280	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4464296	0.87[EUR][1000 genomes]
rs4481007	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4560135	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4597551	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4597552	0.86[CEU][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4600677	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4667341	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4667343	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62170020	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6432680	0.90[CEU][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6432682	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6432683	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6432700	0.95[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6650776	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6733918	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7422660	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7557353	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7564853	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7566441	0.86[EUR][1000 genomes]
rs7569176	0.86[CEU][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7575612	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7580941	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7581265	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7581723	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7586530	0.86[CEU][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7592745	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7600792	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7604483	0.97[EUR][1000 genomes]
rs974902	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv834412	chr2:151014270-151116638	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151111800-151116400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:151112800-151117600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:151113000-151116200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:151113000-151138400	Weak transcription	Liver	Liver
5	chr2:151113200-151116200	Weak transcription	NHDF-Ad	bronchial
6	chr2:151113200-151116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:151113800-151116400	Weak transcription	NHLF	lung
8	chr2:151113800-151116600	Enhancers	Fetal Brain Male	brain
9	chr2:151114600-151116600	Enhancers	Fetal Lung	lung
10	chr2:151115000-151115600	Enhancers	Fetal Brain Female	brain
11	chr2:151115000-151116000	Flanking Active TSS	Brain Germinal Matrix	brain

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