Variant report

Variant	rs10175943
Chromosome Location	chr2:31505618-31505619
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:31504614..31506974-chr2:31507651..31509290,2	MCF-7	breast:
2	chr2:31500916..31502879-chr2:31504188..31506195,2	K562	blood:
3	chr2:31495749..31498208-chr2:31503844..31506065,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1010477	0.91[ASN][1000 genomes]
rs11124256	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11683836	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12988379	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474941	1.00[ASN][1000 genomes]
rs2145036	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366947	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951976	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4951977	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952077	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952078	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs586245	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs590009	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs598204	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs602322	0.91[ASN][1000 genomes]
rs604127	1.00[JPT][hapmap]
rs604986	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs631396	0.91[ASN][1000 genomes]
rs637911	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644417	0.82[ASN][1000 genomes]
rs644736	0.82[ASN][1000 genomes]
rs646103	0.86[ASN][1000 genomes]
rs646200	0.86[ASN][1000 genomes]
rs6543622	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs661015	0.91[ASN][1000 genomes]
rs674791	0.91[ASN][1000 genomes]
rs684967	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7567147	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7581173	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9678585	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949028	chr2:31502801-31665108	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31486600-31510000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:31492400-31507800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:31492800-31510600	Weak transcription	Aorta	Aorta
4	chr2:31495800-31509800	Weak transcription	Esophagus	oesophagus
5	chr2:31497000-31510400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:31504600-31512800	Enhancers	Placenta	Placenta
7	chr2:31504800-31505800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:31505400-31506400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr2:31505600-31506000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:31505600-31506200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:31505600-31506200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:31505600-31506400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:31505600-31506400	Enhancers	HUVEC	blood vessel

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