Variant report

Variant	rs10176551
Chromosome Location	chr2:173047346-173047347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10179896	0.86[ASN][1000 genomes]
rs10187668	0.97[ASN][1000 genomes]
rs10188182	0.93[ASN][1000 genomes]
rs10191165	0.86[ASN][1000 genomes]
rs10198906	0.86[ASN][1000 genomes]
rs10210968	0.97[ASN][1000 genomes]
rs10211286	0.97[ASN][1000 genomes]
rs1038565	0.86[ASN][1000 genomes]
rs1038566	0.86[ASN][1000 genomes]
rs1038567	0.86[ASN][1000 genomes]
rs10497380	0.97[ASN][1000 genomes]
rs12467851	0.86[ASN][1000 genomes]
rs12468728	0.97[ASN][1000 genomes]
rs12472179	0.86[ASN][1000 genomes]
rs12472208	0.86[ASN][1000 genomes]
rs12475912	0.86[ASN][1000 genomes]
rs12692986	0.86[ASN][1000 genomes]
rs12692990	0.97[ASN][1000 genomes]
rs12692991	0.87[ASN][1000 genomes]
rs12692992	0.87[ASN][1000 genomes]
rs12692994	0.86[ASN][1000 genomes]
rs12692995	0.86[ASN][1000 genomes]
rs12692996	0.86[ASN][1000 genomes]
rs12999168	0.86[ASN][1000 genomes]
rs13009470	0.87[ASN][1000 genomes]
rs13019943	0.83[ASN][1000 genomes]
rs13393795	0.87[ASN][1000 genomes]
rs13393977	0.87[ASN][1000 genomes]
rs13407236	0.87[ASN][1000 genomes]
rs1486956	0.87[ASN][1000 genomes]
rs1531998	0.87[ASN][1000 genomes]
rs1906182	0.86[ASN][1000 genomes]
rs1906183	0.86[ASN][1000 genomes]
rs2129476	0.87[ASN][1000 genomes]
rs2129477	0.87[ASN][1000 genomes]
rs2129478	0.84[ASN][1000 genomes]
rs2171319	1.00[ASN][1000 genomes]
rs2357315	0.87[ASN][1000 genomes]
rs34366279	0.87[ASN][1000 genomes]
rs34961322	0.86[ASN][1000 genomes]
rs35482192	0.86[ASN][1000 genomes]
rs35747719	0.87[ASN][1000 genomes]
rs4306685	0.86[ASN][1000 genomes]
rs4335914	0.80[ASN][1000 genomes]
rs4539764	0.87[ASN][1000 genomes]
rs4621143	0.87[ASN][1000 genomes]
rs57033598	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60758744	0.93[ASN][1000 genomes]
rs6433334	0.86[ASN][1000 genomes]
rs6433335	0.97[ASN][1000 genomes]
rs6705994	0.86[ASN][1000 genomes]
rs6706443	0.87[ASN][1000 genomes]
rs6711418	0.86[ASN][1000 genomes]
rs6711450	0.86[ASN][1000 genomes]
rs6720175	0.86[ASN][1000 genomes]
rs6720217	0.86[ASN][1000 genomes]
rs6720539	0.86[ASN][1000 genomes]
rs6721163	0.97[ASN][1000 genomes]
rs6723670	0.86[ASN][1000 genomes]
rs6730323	0.86[ASN][1000 genomes]
rs6730339	0.86[ASN][1000 genomes]
rs6735491	0.97[ASN][1000 genomes]
rs6735511	0.97[ASN][1000 genomes]
rs6735783	0.97[ASN][1000 genomes]
rs6736020	0.87[ASN][1000 genomes]
rs6736027	0.87[ASN][1000 genomes]
rs6739670	0.97[ASN][1000 genomes]
rs6739805	0.94[ASN][1000 genomes]
rs6750823	0.87[ASN][1000 genomes]
rs9287949	0.85[ASN][1000 genomes]
rs9287950	0.86[ASN][1000 genomes]
rs9287951	0.86[ASN][1000 genomes]
rs9677800	0.86[ASN][1000 genomes]
rs9752175	0.87[ASN][1000 genomes]
rs9752190	0.87[ASN][1000 genomes]
rs9752202	0.87[ASN][1000 genomes]
rs9752220	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10176551	ZAK	cis	putamen	BrainEAC

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173045800-173047400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr2:173046000-173047600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:173046200-173047400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:173046600-173047600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:173047200-173047800	Enhancers	HUES48 Cell Line	embryonic stem cell

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