Variant report

Variant	rs10176584
Chromosome Location	chr2:184474807-184474808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10166747	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10183732	0.88[AFR][1000 genomes]
rs13415150	0.88[AFR][1000 genomes]
rs13430672	0.82[AFR][1000 genomes]
rs28594797	0.88[AFR][1000 genomes]
rs28750260	0.88[AFR][1000 genomes]
rs7340208	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184470000-184475600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:184470000-184478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:184471600-184475400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:184474600-184475200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:184474600-184475600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:184474800-184475000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:184474800-184475800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:184474800-184476000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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