Variant report

Variant	rs10176771
Chromosome Location	chr2:96333794-96333795
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM43-1	chr2:96333665-96334010	ENSG00000235584
2	lnc-TRIM43-1	chr2:96333664-96334497	NONHSAT072506
3	lnc-TRIM43-1	chr2:96333665-96334463	XLOC_001575

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10167824	1.00[EUR][1000 genomes]
rs10172762	1.00[EUR][1000 genomes]
rs10176455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187420	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10198238	1.00[EUR][1000 genomes]
rs13389648	1.00[EUR][1000 genomes]
rs13390615	1.00[EUR][1000 genomes]
rs13402791	1.00[EUR][1000 genomes]
rs13410926	1.00[EUR][1000 genomes]
rs55845625	1.00[EUR][1000 genomes]
rs56225135	1.00[EUR][1000 genomes]
rs73957746	1.00[EUR][1000 genomes]
rs7565104	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817258	chr2:95618109-96340788	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	esv3416818	chr2:96072529-96680708	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv834300	chr2:96087967-96337557	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv874660	chr2:96091132-96669134	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv516044	chr2:96150959-96683378	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv998587	chr2:96170558-96378228	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv834301	chr2:96285762-96427246	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv18352	chr2:96291856-96391581	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1002700	chr2:96296630-96422939	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1003371	chr2:96326106-96684876	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:96328200-96336400	Weak transcription	Right Atrium	heart
2	chr2:96330000-96334600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:96330000-96334800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:96330200-96334600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:96330400-96334600	Weak transcription	Primary B cells from cord blood	blood
6	chr2:96330600-96334600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:96330600-96336600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:96331800-96338800	Enhancers	Fetal Thymus	thymus
9	chr2:96332000-96335000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:96332600-96333800	Enhancers	Liver	Liver
11	chr2:96332600-96333800	Enhancers	Fetal Muscle Leg	muscle
12	chr2:96333000-96333800	Enhancers	Fetal Muscle Trunk	muscle
13	chr2:96333000-96334000	Enhancers	Left Ventricle	heart
14	chr2:96333200-96333800	Enhancers	HSMM	muscle
15	chr2:96333200-96334200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:96333200-96334200	Enhancers	NHDF-Ad	bronchial
17	chr2:96333200-96335200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:96333400-96334000	Enhancers	NHEK	skin
19	chr2:96333400-96334200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:96333400-96336800	Enhancers	Dnd41	blood
21	chr2:96333400-96338000	Enhancers	Thymus	Thymus
22	chr2:96333600-96334200	Enhancers	HMEC	breast
23	chr2:96333600-96334800	Enhancers	Lung	lung
24	chr2:96333600-96335800	Weak transcription	HSMMtube	muscle

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