Variant report

Variant	rs10178613
Chromosome Location	chr2:153614722-153614723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153572925..153575286-chr2:153613633..153616476,2	K562	blood:
2	chr2:153612625..153615210-chr2:153618975..153622018,4	K562	blood:
3	chr2:153605163..153608137-chr2:153613624..153617167,3	K562	blood:

Variant related genes	Relation type
ENSG00000177917	Chromatin interaction
ENSG00000196504	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10169433	0.90[EUR][1000 genomes]
rs10193713	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13419134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1437677	0.88[EUR][1000 genomes]
rs2450	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4664120	0.86[EUR][1000 genomes]
rs4664599	0.83[EUR][1000 genomes]
rs4664608	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62179636	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9989874	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834421	chr2:153470109-153664235	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3693438	chr2:153505376-153718246	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv875293	chr2:153578900-153617420	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv834422	chr2:153589448-153743069	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv875294	chr2:153607506-153733325	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153575800-153621400	Weak transcription	Pancreas	Pancrea
2	chr2:153576000-153615800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:153577200-153617600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:153577600-153617800	Weak transcription	NHLF	lung
5	chr2:153587600-153618000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:153587600-153621600	Weak transcription	NHEK	skin
7	chr2:153588000-153617800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr2:153588200-153618600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:153588600-153619400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:153590200-153616800	Weak transcription	Right Ventricle	heart
11	chr2:153590400-153620400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:153592200-153618800	Weak transcription	HSMMtube	muscle
13	chr2:153593200-153618800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:153593200-153628400	Weak transcription	Fetal Kidney	kidney
15	chr2:153593600-153617000	Weak transcription	Brain Anterior Caudate	brain
16	chr2:153593600-153618600	Weak transcription	Osteobl	bone
17	chr2:153593600-153621800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:153593800-153617600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:153593800-153617600	Weak transcription	NH-A	brain
20	chr2:153593800-153620000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr2:153593800-153621400	Weak transcription	HMEC	breast
22	chr2:153593800-153621600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr2:153594400-153615000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:153595200-153616800	Weak transcription	Colonic Mucosa	Colon
25	chr2:153595200-153618000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:153595200-153618000	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:153595200-153621800	Weak transcription	Aorta	Aorta
28	chr2:153595200-153622000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr2:153595400-153618400	Weak transcription	Left Ventricle	heart
30	chr2:153595400-153621600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:153596400-153619400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr2:153596600-153617800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr2:153596600-153621400	Weak transcription	Ovary	ovary
34	chr2:153596600-153621400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr2:153596800-153616000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:153597000-153617800	Weak transcription	Thymus	Thymus
37	chr2:153597000-153619800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr2:153597600-153620600	Strong transcription	Dnd41	blood
39	chr2:153600600-153623400	Weak transcription	Colon Smooth Muscle	Colon
40	chr2:153601400-153619600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr2:153602200-153620600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr2:153602200-153621200	Weak transcription	Fetal Brain Female	brain
43	chr2:153602400-153620600	Weak transcription	Fetal Brain Male	brain
44	chr2:153605200-153615200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:153606600-153619400	Weak transcription	Fetal Heart	heart
46	chr2:153607600-153619400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr2:153608400-153615400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr2:153608800-153620600	Strong transcription	Primary B cells from cord blood	blood
49	chr2:153608800-153621200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:153609400-153621400	Weak transcription	Placenta Amnion	Placenta Amnion

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