Variant report

Variant	rs10178641
Chromosome Location	chr2:208964959-208964960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10188278	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10188286	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10192276	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10198963	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1020581	0.84[ASN][1000 genomes]
rs10497893	0.87[ASN][1000 genomes]
rs11677829	0.81[ASN][1000 genomes]
rs11684908	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11690797	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12988963	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13006347	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13008550	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13034094	0.84[ASN][1000 genomes]
rs1806338	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2084872	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34274138	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34577840	0.84[ASN][1000 genomes]
rs34589201	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34765959	0.84[ASN][1000 genomes]
rs35934862	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35960349	0.85[ASN][1000 genomes]
rs55770589	0.84[ASN][1000 genomes]
rs60163320	0.84[ASN][1000 genomes]
rs6435407	1.00[ASN][1000 genomes]
rs6435411	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6709879	0.84[ASN][1000 genomes]
rs6713275	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6716279	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6728327	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6744189	1.00[ASN][1000 genomes]
rs6745137	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6745370	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6747966	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751131	0.82[ASN][1000 genomes]
rs6757791	0.99[ASN][1000 genomes]
rs6758319	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6759995	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6761316	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732008	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs732009	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7349197	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7586866	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7586953	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7587397	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7589556	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7590593	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7604207	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875744	chr2:208952810-208994045	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208962400-208968600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:208963200-208965400	Weak transcription	Right Atrium	heart
3	chr2:208964400-208965000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:208964600-208965000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:208964600-208965200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr2:208964600-208965200	Enhancers	HepG2	liver
7	chr2:208964600-208966600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:208964600-208967400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:208964800-208965000	Flanking Active TSS	Dnd41	blood
10	chr2:208964800-208965200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr2:208964800-208965600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr2:208964800-208966600	Enhancers	Primary T cells from cord blood	blood
13	chr2:208964800-208966800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr2:208964800-208966800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:208964800-208967000	Enhancers	Primary hematopoietic stem cells	blood
16	chr2:208964800-208967000	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links